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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106444269   protein TRANSPARENT TESTA 16 
 bna-r.1   125607076   protein TRANSPARENT TESTA 16-like 
 bna-r.1   106425709   protein TRANSPARENT TESTA 16-like 
 bna-r.1   106380103   protein TRANSPARENT TESTA 16 
 bra-r.6   103854906   protein TRANSPARENT TESTA 16-like 
 bra-r.6   103865402   protein TRANSPARENT TESTA 16 
 ghi-r.1   121228230   protein TRANSPARENT TESTA 16 
 ghi-r.1   107918783   protein TRANSPARENT TESTA 16-like 
 ghi-r.1   107898867   protein TRANSPARENT TESTA 16-like 
 cit-r.1   102614986   MADS-box protein defh21-like 
 mtr-u.5   11433884   protein TRANSPARENT TESTA 16 
 osa-u.5   4336981   MADS-box transcription factor 31-like 
 zma-u.5   100272346   uncharacterized LOC100272346 
 tae-r.2   123130495   MADS-box transcription factor 29 
 bdi-r.1   100822441   MADS-box transcription factor 29-like 

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Top 50 coexpressed genes to 106444269 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106444269 (bna-r.1 coexpression data)

CoexMap"106444269"


bnaLOC106444269 | Entrez gene ID : 106444269    
Species bna bra ghi cit mtr osa zma tae bdi sot vvi sly nta ppo cre sbi gma ath hvu
Paralog 4 2 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (509 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (792 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (968 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1531 genes)  IEA  
Protein NP_001303188.1 [sequence] [blastp]
XP_048617803.1 [sequence] [blastp]
XP_048617804.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001303188.1)
nucl 7,  cyto 2  (predict for XP_048617803.1)
nucl 10  (predict for XP_048617804.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001303188.1)
other 9  (predict for XP_048617803.1)
other 6  (predict for XP_048617804.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106444269
bna-r.1
for
125607076
bna-r.1
for
106425709
bna-r.1
for
106380103
bra-r.6
for
103854906
bra-r.6
for
103865402
ghi-r.1
for
121228230
ghi-r.1
for
107918783
ghi-r.1
for
107898867
cit-r.1
for
102614986
mtr-u.5
for
11433884
osa-u.5
for
4336981
zma-u.5
for
100272346
tae-r.2
for
123130495
bdi-r.1
for
100822441


Ortholog ID: 3264
Species bna bna bna bra bra ghi ghi ghi cit mtr osa tae bdi
Symbol LOC106425709 LOC106380103 LOC106366053 LOC103854906 LOC103865402 LOC121228230 LOC107918783 LOC107894052 LOC102614986 LOC11433884 LOC4336981 LOC780650 LOC100822441
Function* protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16-like MADS-box protein defh21-like protein TRANSPARENT TESTA 16 MADS-box transcription factor 31-like MADS-box transcription factor 29 MADS-box transcription factor 29-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00053 Ascorbate and aldarate metabolism 2
osa00480 Glutathione metabolism 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106425709 106380103 106366053 103854906 103865402 121228230 107918783 107894052 102614986 11433884 4336981 780650 100822441
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