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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106445278   rubisco accumulation factor 1.2, chloroplastic 
 bna-r.1   125589598   rubisco accumulation factor 1.1, chloroplastic-like 
 bna-r.1   125602817   rubisco accumulation factor 1.1, chloroplastic-like 
 bna-r.1   106362541   rubisco accumulation factor 1.2, chloroplastic-like 
 bra-r.6   103874579   rubisco accumulation factor 1.1, chloroplastic 
 bra-r.6   103850044   rubisco accumulation factor 1.2, chloroplastic 
 ath-u.5   AT3G04550   rubisco accumulation factor-like protein 
 ath-u.5   AT5G28500   rubisco accumulation factor-like protein 
 ghi-r.1   107920363   rubisco accumulation factor 1.1, chloroplastic 
 ghi-r.1   107893598   rubisco accumulation factor 1.1, chloroplastic 
 cit-r.1   102614377   rubisco accumulation factor 1.1, chloroplastic 
 gma-u.5   100793519   rubisco accumulation factor 1.1, chloroplastic 
 vvi-u.5   100256476   rubisco accumulation factor 1.1, chloroplastic 
 ppo-u.5   7474619   rubisco accumulation factor 1.1, chloroplastic 
 mtr-u.5   11435114   rubisco accumulation factor 1.1, chloroplastic 
 sly-u.5   101251433   rubisco accumulation factor 1.1, chloroplastic 
 sot-r.1   102605426   rubisco accumulation factor 1, chloroplastic 
 nta-r.1   107797026   rubisco accumulation factor 1.2, chloroplastic-like 
 nta-r.1   107808875   rubisco accumulation factor 1.2, chloroplastic 
 osa-u.5   4348745   rubisco accumulation factor 1, chloroplastic-like 
 zma-u.5   100272838   Rubisco accumulation factor 1, chloroplastic 
 tae-r.2   123180946   rubisco accumulation factor 1, chloroplastic 
 tae-r.2   123119513   rubisco accumulation factor 1, chloroplastic 
 tae-r.2   123044329   rubisco accumulation factor 1, chloroplastic 
 hvu-r.1   123429906   rubisco accumulation factor 1, chloroplastic-like 
 sbi-r.1   8085879   rubisco accumulation factor 1, chloroplastic 
 bdi-r.1   100844485   rubisco accumulation factor 1, chloroplastic 
 cre-r.1   CHLRE_06g308450v5   uncharacterized protein 

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Top 50 coexpressed genes to 106445278 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106445278 (bna-r.1 coexpression data)

CoexMap"106445278"


bnaLOC106445278 | Entrez gene ID : 106445278    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO MF
Protein XP_013742247.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_013742247.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_013742247.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106445278
bna-r.1
for
125589598
bna-r.1
for
125602817
bna-r.1
for
106362541
bra-r.6
for
103874579
bra-r.6
for
103850044
ath-u.5
for
AT3G04550
ath-u.5
for
AT5G28500
ghi-r.1
for
107920363
ghi-r.1
for
107893598
cit-r.1
for
102614377
gma-u.5
for
100793519
vvi-u.5
for
100256476
ppo-u.5
for
7474619
mtr-u.5
for
11435114
sly-u.5
for
101251433
sot-r.1
for
102605426
nta-r.1
for
107797026
nta-r.1
for
107808875
osa-u.5
for
4348745
zma-u.5
for
100272838
tae-r.2
for
123180946
tae-r.2
for
123119513
tae-r.2
for
123044329
hvu-r.1
for
123429906
sbi-r.1
for
8085879
bdi-r.1
for
100844485
cre-r.1
for
CHLRE_06g308450v5


Ortholog ID: 7558
Species bna bna bna bra bra ath ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC125589598 LOC125602817 LOC106362541 LOC103874579 LOC103850044 AT3G04550 AT5G28500 LOC107920363 LOC107893598 LOC102614377 LOC100793519 LOC100256476 LOC7474619 LOC11435114 LOC101251433 LOC102605426 LOC107797026 LOC107808875 LOC4348745 LOC100272838 LOC123180946 LOC123119513 LOC123044329 LOC123429906 LOC8085879 LOC100844485 CHLRE_06g308450v5
Function* rubisco accumulation factor 1.1, chloroplastic-like rubisco accumulation factor 1.1, chloroplastic-like rubisco accumulation factor 1.2, chloroplastic-like rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.2, chloroplastic rubisco accumulation factor-like protein rubisco accumulation factor-like protein rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1.2, chloroplastic-like rubisco accumulation factor 1.2, chloroplastic rubisco accumulation factor 1, chloroplastic-like Rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1, chloroplastic-like rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra01230 Biosynthesis of amino acids 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00030 Pentose phosphate pathway 2
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125589598 125602817 106362541 103874579 103850044 819611 832943 107920363 107893598 102614377 100793519 100256476 7474619 11435114 101251433 102605426 107797026 107808875 4348745 100272838 123180946 123119513 123044329 123429906 8085879 100844485 66053915
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