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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106445708   CDT1-like protein a, chloroplastic 
 ath-u.5   CDT1A   CDT1-like protein A 
 gma-u.5   100808801   CDT1-like protein a, chloroplastic 
 gma-u.5   100778818   CDT1-like protein a, chloroplastic 
 ppo-u.5   7476906   CDT1-like protein a, chloroplastic 
 ppo-u.5   7471978   CDT1-like protein a, chloroplastic 
 mtr-u.5   25484295   CDT1-like protein a, chloroplastic 
 sly-u.5   101267155   CDT1-like protein a, chloroplastic 
 sly-u.5   101265931   CDT1-like protein a, chloroplastic 
 osa-u.5   4335111   CDT1-like protein a, chloroplastic 
 zma-u.5   103638085   CDT1-like protein a, chloroplastic 

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Top 50 coexpressed genes to 106445708 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106445708 (bna-r.1 coexpression data)

CoexMap"106445708"


bnaLOC106445708 | Entrez gene ID : 106445708    
Species bna ath gma ppo mtr sly osa zma sbi nta bra cre vvi cit hvu bdi sot tae ghi
Paralog 1 1 2 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030174 [list] [network] regulation of DNA-templated DNA replication initiation  (9 genes)  IEA  
GO:0071163 [list] [network] DNA replication preinitiation complex assembly  (10 genes)  IEA  
GO:0000076 [list] [network] DNA replication checkpoint signaling  (35 genes)  IEA  
GO:0000278 [list] [network] mitotic cell cycle  (556 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0070182 [list] [network] DNA polymerase binding  (13 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_013742770.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  cyto 1,  cysk 1,  golg 1  (predict for XP_013742770.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_013742770.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106445708

.
ath-u.5
for
CDT1A

.
gma-u.5
for
100808801

.
gma-u.5
for
100778818

.
ppo-u.5
for
7476906

.
ppo-u.5
for
7471978

.
mtr-u.5
for
25484295

.
sly-u.5
for
101267155

.
sly-u.5
for
101265931

.
osa-u.5
for
4335111

.
zma-u.5
for
103638085

.


Ortholog ID: 4524
Species ath gma gma sly sly osa zma bra bra ppo ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol CDT1A LOC100778818 LOC100808801 LOC101265931 LOC101267155 LOC4335111 LOC103638085 LOC103867904 LOC117132729 LOC7471978 LOC7476906 LOC25484295 LOC123051041 LOC123186978 LOC123448637 LOC123402578 LOC107922782 LOC107924104 LOC106437751 LOC106445708 LOC8071312 LOC102583611 LOC102581989 LOC102620564 LOC100834979 LOC107803149 LOC142179373
Function* CDT1-like protein A CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein b CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein b CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 11
ath03440 Homologous recombination 3
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 11
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03430 Mismatch repair 3
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 10
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03410 Base excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 10
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03410 Base excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 7
ppo03410 Base excision repair 3
ppo03420 Nucleotide excision repair 3
ppo03430 Mismatch repair 3
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 10
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 11
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 3
hvu04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03420 Nucleotide excision repair 3
bna03430 Mismatch repair 3
bna03440 Homologous recombination 3
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03430 Mismatch repair 3
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 9
sot03440 Homologous recombination 2
sot03460 Fanconi anemia pathway 2
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 8
sot03440 Homologous recombination 3
sot03460 Fanconi anemia pathway 2
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 7
bdi03440 Homologous recombination 3
bdi03460 Fanconi anemia pathway 2
bdi03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817684 100778818 100808801 101265931 101267155 4335111 103638085 103867904 117132729 7471978 7476906 25484295 123051041 123186978 123448637 123402578 107922782 107924104 106437751 106445708 8071312 102583611 102581989 102620564 100834979 107803149 142179373
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