ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	111213218	CDT1-like protein a, chloroplastic
bna-r.1	106437751	CDT1-like protein a, chloroplastic
bna-r.1	106451375	CDT1-like protein a, chloroplastic
bna-r.1	106445708	CDT1-like protein a, chloroplastic
bra-r.6	103857365	CDT1-like protein a, chloroplastic
bra-r.6	103867904	CDT1-like protein a, chloroplastic
bra-r.6	117132729	CDT1-like protein a, chloroplastic
ath-u.5	CDT1A	CDT1-like protein A
ghi-r.1	107936712	CDT1-like protein a, chloroplastic
ghi-r.1	107955444	CDT1-like protein a, chloroplastic
ghi-r.1	107922782	CDT1-like protein a, chloroplastic
cit-r.1	102620564	CDT1-like protein b
gma-u.5	100808801	CDT1-like protein a, chloroplastic
gma-u.5	100778818	CDT1-like protein a, chloroplastic
ppo-u.5	7476906	CDT1-like protein a, chloroplastic
ppo-u.5	7471978	CDT1-like protein a, chloroplastic
mtr-u.5	25484295	CDT1-like protein a, chloroplastic
sly-u.5	101267155	CDT1-like protein a, chloroplastic
sly-u.5	101265931	CDT1-like protein a, chloroplastic
sot-r.1	102581989	CDT1-like protein a, chloroplastic
sot-r.1	102583611	CDT1-like protein a, chloroplastic
nta-r.1	142171498	CDT1-like protein a, chloroplastic
nta-r.1	107760451	CDT1-like protein a, chloroplastic
nta-r.1	107818438	CDT1-like protein a, chloroplastic
osa-u.5	4335111	CDT1-like protein a, chloroplastic
zma-u.5	103638085	CDT1-like protein a, chloroplastic
tae-r.2	123043135	CDT1-like protein a, chloroplastic
tae-r.2	123186978	CDT1-like protein a, chloroplastic
hvu-r.1	123448637	CDT1-like protein a, chloroplastic
hvu-r.1	123408505	uncharacterized LOC123408505
hvu-r.1	123424349	CDT1-like protein a, chloroplastic
sbi-r.1	8071312	CDT1-like protein a, chloroplastic
bdi-r.1	100834979	CDT1-like protein a, chloroplastic

Top 50 coexpressed genes to 111213218 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 111213218 (bna-r.1 coexpression data)

CoexMap"111213218"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0030174 [list] [network] regulation of DNA-templated DNA replication initiation	(9 genes)	IEA
GO:0071163 [list] [network] DNA replication preinitiation complex assembly	(10 genes)	IEA
GO:0000076 [list] [network] DNA replication checkpoint signaling	(35 genes)	IEA
GO:0000278 [list] [network] mitotic cell cycle	(556 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(9971 genes)

IEA

GO MF

GO:0070182 [list] [network] DNA polymerase binding	(13 genes)	IEA
GO:0003677 [list] [network] DNA binding	(6522 genes)	IEA

Protein

XP_022570629.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 3, mito 3, chlo_mito 3

(predict for XP_022570629.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_022570629.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 111213218	bna-r.1 for 106437751	bna-r.1 for 106451375	bna-r.1 for 106445708	bra-r.6 for 103857365	bra-r.6 for 103867904	bra-r.6 for 117132729	ath-u.5 for CDT1A	ghi-r.1 for 107936712	ghi-r.1 for 107955444	ghi-r.1 for 107922782	cit-r.1 for 102620564	gma-u.5 for 100808801	gma-u.5 for 100778818	ppo-u.5 for 7476906	ppo-u.5 for 7471978	mtr-u.5 for 25484295	sly-u.5 for 101267155	sly-u.5 for 101265931	sot-r.1 for 102581989	sot-r.1 for 102583611	nta-r.1 for 142171498	nta-r.1 for 107760451	nta-r.1 for 107818438	osa-u.5 for 4335111	zma-u.5 for 103638085	tae-r.2 for 123043135	tae-r.2 for 123186978	hvu-r.1 for 123448637	hvu-r.1 for 123408505	hvu-r.1 for 123424349	sbi-r.1 for 8071312	bdi-r.1 for 100834979

Ortholog

Ortholog ID: 4524

Species

bna

bra

ath

ghi

cit

gma

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

CDT1A

Function^*

CDT1-like protein a, chloroplastic

CDT1-like protein A

CDT1-like protein a, chloroplastic

CDT1-like protein b

CDT1-like protein a, chloroplastic

CDT1-like protein b

CDT1-like protein a, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	4
bna03410	Base excision repair	2
bna03420	Nucleotide excision repair	2
bna03430	Mismatch repair	2
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	7
bna03420	Nucleotide excision repair	3
bna03430	Mismatch repair	3
bna03440	Homologous recombination	3
bna03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	7
bna03430	Mismatch repair	3
bna03410	Base excision repair	2
bna03420	Nucleotide excision repair	2
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	9
bra03420	Nucleotide excision repair	2
bra03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	10
bra03420	Nucleotide excision repair	3
bra03430	Mismatch repair	3
bra03410	Base excision repair	2
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	10
bra03420	Nucleotide excision repair	3
bra03430	Mismatch repair	3
bra03410	Base excision repair	2
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03030	DNA replication	11
ath03440	Homologous recombination	3
ath03420	Nucleotide excision repair	2
ath03430	Mismatch repair	2
ath03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03030	DNA replication	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	11
gma03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	10
ppo03410	Base excision repair	2
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	7
ppo03410	Base excision repair	3
ppo03420	Nucleotide excision repair	3
ppo03430	Mismatch repair	3
ppo00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03030	DNA replication	11
mtr03420	Nucleotide excision repair	2
mtr03430	Mismatch repair	2
mtr03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	11
sly03430	Mismatch repair	3
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	11
sly03420	Nucleotide excision repair	2
sly03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	8
sot03440	Homologous recombination	3
sot03460	Fanconi anemia pathway	2
sot03420	Nucleotide excision repair	2
sot03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	9
sot03440	Homologous recombination	2
sot03460	Fanconi anemia pathway	2
sot03420	Nucleotide excision repair	2
sot03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2
hvu04144	Endocytosis	2
hvu05100	Bacterial invasion of epithelial cells	2
hvu00040	Pentose and glucuronate interconversions	2
hvu00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	3
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03030	DNA replication	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	7
bdi03440	Homologous recombination	3
bdi03460	Fanconi anemia pathway	2
bdi03430	Mismatch repair	2

Expression

Expression pattern

Entrez Gene ID^*

111213218

106437751

106445708

103857365

103867904

117132729

817684

107936712

107922782

107924104

102620564

100808801

100778818

7476906

7471978

25484295

101267155

101265931

102581989

102583611

107760451

107803149

142179373

4335111

103638085

123043135

123186978

123051041

123448637

123424349

123402578

8071312

100834979

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	vvi	cre
Paralog	4	3	1	3	1	2	2	1	2	2	3	1	1	2	3	1	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 111213218 (bna-r.1 coexpression data)

Top 50 enrichment test to 111213218 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**