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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106446422   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 bna-r.1   125580937   pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like 
 bna-r.1   106414964   pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like 
 bna-r.1   106360649   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 bra-r.6   103849518   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 bra-r.6   103869700   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 ath-u.5   SVR7   pentatricopeptide (PPR) repeat-containing protein 
 ghi-r.1   107960156   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 ghi-r.1   107963723   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 cit-r.1   102613998   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 gma-u.5   100794718   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 gma-u.5   100819233   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 gma-u.5   100795559   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 vvi-u.5   100259703   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 ppo-u.5   7479598   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 ppo-u.5   7474081   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 mtr-u.5   25486257   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 mtr-u.5   11437309   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 mtr-u.5   25486258   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 sly-u.5   101258591   pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like 
 sly-u.5   101264082   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 sot-r.1   102587615   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 osa-u.5   4332063   pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like 
 zma-u.5   100191483   ATP synthase4 
 tae-r.2   123098233   pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic 
 tae-r.2   123092961   pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic 
 tae-r.2   123085267   pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like 
 hvu-r.1   123446786   pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic 
 sbi-r.1   8056885   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 bdi-r.1   100832587   pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic 

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Top 50 coexpressed genes to 106446422 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106446422 (bna-r.1 coexpression data)

CoexMap"106446422"


bnaLOC106446422 | Entrez gene ID : 106446422    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot osa zma tae hvu sbi bdi cre nta
Paralog 4 2 1 2 1 3 1 2 3 2 1 1 1 3 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013743604.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_013743604.1)
Subcellular
localization
TargetP
chlo 8,  other 3  (predict for XP_013743604.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106446422
bna-r.1
for
125580937
bna-r.1
for
106414964
bna-r.1
for
106360649
bra-r.6
for
103849518
bra-r.6
for
103869700
ath-u.5
for
SVR7
ghi-r.1
for
107960156
ghi-r.1
for
107963723
cit-r.1
for
102613998
gma-u.5
for
100794718
gma-u.5
for
100819233
gma-u.5
for
100795559
vvi-u.5
for
100259703
ppo-u.5
for
7479598
ppo-u.5
for
7474081
mtr-u.5
for
25486257
mtr-u.5
for
11437309
mtr-u.5
for
25486258
sly-u.5
for
101258591
sly-u.5
for
101264082
sot-r.1
for
102587615
osa-u.5
for
4332063
zma-u.5
for
100191483
tae-r.2
for
123098233
tae-r.2
for
123092961
tae-r.2
for
123085267
hvu-r.1
for
123446786
sbi-r.1
for
8056885
bdi-r.1
for
100832587


Ortholog ID: 6300
Species bna bna bna bra bra ath ghi ghi cit gma gma gma vvi ppo ppo mtr mtr mtr sly sly sot osa zma tae tae tae hvu sbi bdi
Symbol LOC106446422 LOC106414964 LOC106360649 LOC103849518 LOC103869700 SVR7 LOC107960156 LOC107963723 LOC102613998 LOC100794718 LOC100819233 LOC100795559 LOC100259703 LOC7479598 LOC7474081 LOC25486257 LOC11437309 LOC25486258 LOC101258591 LOC101264082 LOC102587615 LOC4332063 LOC100191483 LOC123098233 LOC123092961 LOC123085267 LOC123446786 LOC8056885 LOC100832587
Function* pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like ATP synthase4 pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra03040 Spliceosome 2
bra04141 Protein processing in endoplasmic reticulum 2
bra04144 Endocytosis 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03018 RNA degradation 3
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 3
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106446422 106414964 106360649 103849518 103869700 827333 107960156 107963723 102613998 100794718 100819233 100795559 100259703 7479598 7474081 25486257 11437309 25486258 101258591 101264082 102587615 4332063 100191483 123098233 123092961 123085267 123446786 8056885 100832587
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