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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25486258   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 mtr-r.5   25486258   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 mtr-u.5   11437309   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 mtr-u.5   25486257   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 gma-u.5   100795559   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 gma-u.5   100794718   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 gma-u.5   100819233   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 ppo-u.5   7474081   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 ppo-u.5   7479598   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 ath-u.5   SVR7   pentatricopeptide (PPR) repeat-containing protein 
 vvi-u.5   100259703   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 sly-u.5   101258591   pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like 
 sly-u.5   101264082   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 osa-u.5   4332063   pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like 
 zma-u.5   100191483   ATP synthase4 

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Top 50 coexpressed genes to 25486258 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25486258 (mtr-u.5 coexpression data)

CoexMap"25486258"


mtrLOC25486258 | Entrez gene ID : 25486258      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 2 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045727 [list] [network] positive regulation of translation  (19 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (100 genes)  IEA  
GO MF
GO:0042134 [list] [network] rRNA primary transcript binding  (8 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (294 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_013462936.1 [sequence] [blastp]
XP_039686313.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_013462936.1)
chlo 9  (predict for XP_039686313.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_013462936.1)
chlo 9  (predict for XP_039686313.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25486258

.
mtr-r.5
for
25486258

.
mtr-u.5
for
11437309

.
mtr-u.5
for
25486257

.
gma-u.5
for
100795559

.
gma-u.5
for
100794718

.
gma-u.5
for
100819233

.
ppo-u.5
for
7474081

.
ppo-u.5
for
7479598

.
ath-u.5
for
SVR7

.
vvi-u.5
for
100259703

.
sly-u.5
for
101258591

.
sly-u.5
for
101264082

.
osa-u.5
for
4332063

.
zma-u.5
for
100191483

.


Ortholog ID: 6300
Species ath gma gma sly sly osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi
Symbol SVR7 LOC100819233 LOC100794718 LOC101258591 LOC101264082 LOC4332063 LOC100191483 LOC103869700 LOC103849518 LOC100259703 LOC7479598 LOC25486257 LOC25486258 LOC123098233 LOC123085267 LOC123446786 LOC107963723 LOC107960156 LOC106360649 LOC106446422 LOC8056885 LOC102587615 LOC102613998 LOC100832587
Function* pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like ATP synthase4 pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein At4g16390, chloroplastic pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 3
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra03040 Spliceosome 2
bra04141 Protein processing in endoplasmic reticulum 2
bra04144 Endocytosis 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03018 RNA degradation 3
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827333 100819233 100794718 101258591 101264082 4332063 100191483 103869700 103849518 100259703 7479598 25486257 25486258 123098233 123085267 123446786 107963723 107960156 106360649 106446422 8056885 102587615 102613998 100832587
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