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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106450973   pre-mRNA-processing-splicing factor 8A-like 
 bna-r.1   106437553   pre-mRNA-processing-splicing factor 8A-like 
 bna-r.1   106365926   pre-mRNA-processing-splicing factor 8A 
 bna-r.1   106408684   pre-mRNA-processing-splicing factor 8A-like 
 bra-r.6   103865106   pre-mRNA-processing-splicing factor 8A 
 bra-r.6   103857797   pre-mRNA-processing-splicing factor 8A 
 ath-u.5   AT4G38780   pre-mRNA-processing-splicing factor-like protein 
 ath-u.5   SUS2   Pre-mRNA-processing-splicing factor 
 ghi-r.1   107914156   pre-mRNA-processing-splicing factor 8A 
 ghi-r.1   107906455   pre-mRNA-processing-splicing factor 8A 
 ghi-r.1   107897276   pre-mRNA-processing-splicing factor 8A 
 cit-r.1   102619923   pre-mRNA-processing-splicing factor 8A 
 gma-u.5   100814404   pre-mRNA-processing-splicing factor 8A 
 gma-u.5   100804026   pre-mRNA-processing-splicing factor 8A 
 vvi-u.5   100257584   pre-mRNA-processing-splicing factor 8A 
 ppo-u.5   18096703   pre-mRNA-processing-splicing factor 8A 
 mtr-u.5   11421219   pre-mRNA-processing-splicing factor 8A 
 mtr-u.5   11425902   pre-mRNA-processing-splicing factor 8A 
 sly-u.5   101261833   pre-mRNA-processing-splicing factor 8A 
 sot-r.1   102586113   pre-mRNA-processing-splicing factor 8-like 
 nta-r.1   107822977   pre-mRNA-processing-splicing factor 8A 
 nta-r.1   107813473   pre-mRNA-processing-splicing factor 8A 
 nta-r.1   107793846   pre-mRNA-processing-splicing factor 8A 
 osa-u.5   4340248   pre-mRNA-processing-splicing factor 8A 
 osa-u.5   4337900   pre-mRNA-processing-splicing factor 8A 
 zma-u.5   103638016   pre-mRNA-processing-splicing factor 8A 
 zma-u.5   103629533   pre-mRNA-processing-splicing factor 8A 
 tae-r.2   123157464   pre-mRNA-processing-splicing factor 8A 
 tae-r.2   123165098   pre-mRNA-processing-splicing factor 8A 
 tae-r.2   123149724   pre-mRNA-processing-splicing factor 8A 
 hvu-r.1   123395320   pre-mRNA-processing-splicing factor 8A 
 hvu-r.1   123407132   pre-mRNA-processing-splicing factor 8A-like 
 sbi-r.1   8070895   pre-mRNA-processing-splicing factor 8A 
 bdi-r.1   100846384   pre-mRNA-processing-splicing factor 8A 
 cre-r.1   CHLRE_01g016050v5   uncharacterized protein 

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Top 50 coexpressed genes to 106450973 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106450973 (bna-r.1 coexpression data)

CoexMap"106450973"


bnaLOC106450973 | Entrez gene ID : 106450973    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 1 2 1 1 2 1 1 3 2 2 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000244 [list] [network] spliceosomal tri-snRNP complex assembly  (23 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005682 [list] [network] U5 snRNP  (56 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
GO:0097157 [list] [network] pre-mRNA intronic binding  (11 genes)  IEA  
GO:0030623 [list] [network] U5 snRNA binding  (12 genes)  IEA  
GO:0030620 [list] [network] U2 snRNA binding  (25 genes)  IEA  
GO:0017070 [list] [network] U6 snRNA binding  (28 genes)  IEA  
GO:0030619 [list] [network] U1 snRNA binding  (47 genes)  IEA  
GO:0008237 [list] [network] metallopeptidase activity  (266 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_048636469.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  plas 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_048636469.1)
Subcellular
localization
TargetP
other 8  (predict for XP_048636469.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106450973
bna-r.1
for
106437553
bna-r.1
for
106365926
bna-r.1
for
106408684
bra-r.6
for
103865106
bra-r.6
for
103857797
ath-u.5
for
AT4G38780
ath-u.5
for
SUS2
ghi-r.1
for
107914156
ghi-r.1
for
107906455
ghi-r.1
for
107897276
cit-r.1
for
102619923
gma-u.5
for
100814404
gma-u.5
for
100804026
vvi-u.5
for
100257584
ppo-u.5
for
18096703
mtr-u.5
for
11421219
mtr-u.5
for
11425902
sly-u.5
for
101261833
sot-r.1
for
102586113
nta-r.1
for
107822977
nta-r.1
for
107813473
nta-r.1
for
107793846
osa-u.5
for
4340248
osa-u.5
for
4337900
zma-u.5
for
103638016
zma-u.5
for
103629533
tae-r.2
for
123157464
tae-r.2
for
123165098
tae-r.2
for
123149724
hvu-r.1
for
123395320
hvu-r.1
for
123407132
sbi-r.1
for
8070895
bdi-r.1
for
100846384
cre-r.1
for
CHLRE_01g016050v5


Ortholog ID: 4968
Species bna bna bna bra bra ath ath ghi ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC106450973 LOC106437553 LOC106447039 LOC103865106 LOC103857797 AT4G38780 SUS2 LOC107914156 LOC107906455 LOC107897276 LOC102619923 LOC100814404 LOC100804026 LOC100257584 LOC18096703 LOC11421219 LOC11425902 LOC101261833 LOC102586113 LOC107822977 LOC107813473 LOC107793846 LOC4340248 LOC4337900 LOC103638016 LOC103629533 LOC123149724 LOC123111825 LOC123103608 LOC123395320 LOC123407132 LOC8070895 LOC100846384 CHLRE_01g016050v5
Function* pre-mRNA-processing-splicing factor 8A-like pre-mRNA-processing-splicing factor 8A-like pre-mRNA-processing-splicing factor 8A-like pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor-like protein Pre-mRNA-processing-splicing factor pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8-like pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A-like pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 15
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 15
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 13
bna03018 RNA degradation 2
bna03030 DNA replication 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
bra03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 6
bra03040 Spliceosome 5
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 3
ath03410 Base excision repair 3
ath03440 Homologous recombination 3
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03082 ATP-dependent chromatin remodeling 4
ghi00230 Purine metabolism 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03082 ATP-dependent chromatin remodeling 4
ghi04814 Motor proteins 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03082 ATP-dependent chromatin remodeling 4
ghi04814 Motor proteins 2
ghi00230 Purine metabolism 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit04120 Ubiquitin mediated proteolysis 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma03040 Spliceosome 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi03040 Spliceosome 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo04120 Ubiquitin mediated proteolysis 3
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03040 Spliceosome 2
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03018 RNA degradation 2
nta04142 Lysosome 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 4
nta03013 Nucleocytoplasmic transport 2
nta03018 RNA degradation 2
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 4
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106450973 106437553 106447039 103865106 103857797 830033 844347 107914156 107906455 107897276 102619923 100814404 100804026 100257584 18096703 11421219 11425902 101261833 102586113 107822977 107813473 107793846 4340248 4337900 103638016 103629533 123149724 123111825 123103608 123395320 123407132 8070895 100846384 5715121
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