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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106450988   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 bna-r.1   111213884   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 bra-r.6   103867060   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 ath-u.5   SVR1   pseudouridine synthase family protein 
 ghi-r.1   107934529   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 ghi-r.1   107915593   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 cit-r.1   102619728   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 gma-u.5   100808046   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 vvi-u.5   100247893   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 ppo-u.5   7479859   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 mtr-u.5   25484927   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 sly-u.5   101243758   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 sot-r.1   102601559   uncharacterized RNA pseudouridine synthase aq_1464 
 nta-r.1   107832585   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 nta-r.1   107827046   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 osa-u.5   4331652   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 zma-u.5   100285657   Putative rRNA large subunit pseudouridine synthase SVR1, chloroplastic 
 tae-r.2   123093178   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 tae-r.2   123084911   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 tae-r.2   123098445   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 hvu-r.1   123449471   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 sbi-r.1   8080543   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 bdi-r.1   100846238   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 cre-r.1   CHLRE_02g095121v5   uncharacterized protein 

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Top 50 coexpressed genes to 106450988 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106450988 (bna-r.1 coexpression data)

CoexMap"106450988"


bnaLOC106450988 | Entrez gene ID : 106450988    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000488 [list] [network] maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)  (2 genes)  IEA  
GO:0000489 [list] [network] maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)  (2 genes)  IEA  
GO:0032544 [list] [network] plastid translation  (16 genes)  IEA  
GO:0001522 [list] [network] pseudouridine synthesis  (69 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (48 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013748282.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1,  pero 1  (predict for XP_013748282.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_013748282.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106450988
bna-r.1
for
111213884
bra-r.6
for
103867060
ath-u.5
for
SVR1
ghi-r.1
for
107934529
ghi-r.1
for
107915593
cit-r.1
for
102619728
gma-u.5
for
100808046
vvi-u.5
for
100247893
ppo-u.5
for
7479859
mtr-u.5
for
25484927
sly-u.5
for
101243758
sot-r.1
for
102601559
nta-r.1
for
107832585
nta-r.1
for
107827046
osa-u.5
for
4331652
zma-u.5
for
100285657
tae-r.2
for
123093178
tae-r.2
for
123084911
tae-r.2
for
123098445
hvu-r.1
for
123449471
sbi-r.1
for
8080543
bdi-r.1
for
100846238
cre-r.1
for
CHLRE_02g095121v5


Ortholog ID: 10031
Species bna bna bra ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106450988 LOC111213884 LOC103867060 SVR1 LOC107934529 LOC107915593 LOC102619728 LOC100808046 LOC100247893 LOC7479859 LOC25484927 LOC101243758 LOC102601559 LOC107832585 LOC107827046 LOC4331652 LOC100285657 LOC123093178 LOC123084911 LOC123098445 LOC123449471 LOC8080543 LOC100846238 CHLRE_02g095121v5
Function* putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic pseudouridine synthase family protein putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic uncharacterized RNA pseudouridine synthase aq_1464 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic Putative rRNA large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00261 Monobactam biosynthesis 2
bna00300 Lysine biosynthesis 2
bna01230 Biosynthesis of amino acids 2
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106450988 111213884 103867060 818500 107934529 107915593 102619728 100808046 100247893 7479859 25484927 101243758 102601559 107832585 107827046 4331652 100285657 123093178 123084911 123098445 123449471 8080543 100846238 5726728
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