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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7479859   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 ppo-r.4   7479859   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 ppo-m.4   7479859   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 gma-u.5   100808046   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 mtr-u.5   25484927   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 ath-u.5   SVR1   pseudouridine synthase family protein 
 vvi-u.5   100247893   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 sly-u.5   101243758   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 osa-u.5   4331652   putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 
 zma-u.5   100285657   Putative rRNA large subunit pseudouridine synthase SVR1, chloroplastic 

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Top 50 coexpressed genes to 7479859 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7479859 (ppo-u.5 coexpression data)

CoexMap"7479859"


ppoLOC7479859 | Entrez gene ID : 7479859    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000488 [list] [network] maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)  (1 genes)  IEA  
GO:0000489 [list] [network] maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)  (1 genes)  IEA  
GO:0032544 [list] [network] plastid translation  (5 genes)  IEA  
GO:0001522 [list] [network] pseudouridine synthesis  (28 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_002311995.3 [sequence] [blastp]
XP_024461704.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_002311995.3)
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_024461704.2)
Subcellular
localization
TargetP
mito 5,  chlo 5  (predict for XP_002311995.3)
mito 5,  chlo 5  (predict for XP_024461704.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7479859

.
ppo-r.4
for
7479859

.
ppo-m.4
for
7479859

.
gma-u.5
for
100808046

.
mtr-u.5
for
25484927

.
ath-u.5
for
SVR1

.
vvi-u.5
for
100247893

.
sly-u.5
for
101243758

.
osa-u.5
for
4331652

.
zma-u.5
for
100285657

.


Ortholog ID: 10031
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SVR1 LOC100808046 LOC101243758 LOC4331652 LOC100285657 LOC103867060 LOC100247893 LOC7479859 LOC25484927 LOC123098445 LOC123084911 LOC123449471 LOC107934529 LOC107915593 LOC106450988 LOC111213884 CHLRE_02g095121v5 LOC8080543 LOC102601559 LOC102619728 LOC100846238 LOC107832585 LOC107827046
Function* pseudouridine synthase family protein putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic Putative rRNA large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic uncharacterized protein putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic uncharacterized RNA pseudouridine synthase aq_1464 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00261 Monobactam biosynthesis 2
bna00300 Lysine biosynthesis 2
bna01230 Biosynthesis of amino acids 2
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818500 100808046 101243758 4331652 100285657 103867060 100247893 7479859 25484927 123098445 123084911 123449471 107934529 107915593 106450988 111213884 5726728 8080543 102601559 102619728 100846238 107832585 107827046
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