ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106452747	60S ribosomal protein L35-1
ath-u.5	AT2G39390	Ribosomal L29 family protein
ath-u.5	AT3G09500	Ribosomal L29 family protein
ath-u.5	AT3G55170	Ribosomal L29 family protein
gma-u.5	100789845	60S ribosomal protein L35
gma-u.5	100305671	uncharacterized LOC100305671
gma-u.5	100306624	uncharacterized LOC100306624
vvi-u.5	100265729	large ribosomal subunit protein uL29
vvi-u.5	100246718	large ribosomal subunit protein uL29
ppo-u.5	7469794	60S ribosomal protein L35
ppo-u.5	7458614	60S ribosomal protein L35
ppo-u.5	7491950	60S ribosomal protein L35
mtr-u.5	11412433	60S ribosomal protein L35
mtr-u.5	25484086	60S ribosomal protein L35
mtr-u.5	11408161	60S ribosomal protein L35
sly-u.5	101267698	large ribosomal subunit protein uL29-like
sly-u.5	101256286	large ribosomal subunit protein uL29
sly-u.5	778319	60S ribosomal protein L35-like
osa-u.5	4335607	large ribosomal subunit protein uL29
osa-u.5	4329423	large ribosomal subunit protein uL29
zma-u.5	100281802	60S ribosomal protein L35
zma-u.5	100282133	60S ribosomal protein L35
zma-u.5	100282013	60S ribosomal protein L35

Top 50 coexpressed genes to 106452747 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106452747 (bna-r.1 coexpression data)

CoexMap"106452747"

[Cytoscape]

Annotation

functional annotation

KEGG

bna03010 [list] [network] Ribosome (7497 genes)

GO BP

GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	(66 genes)	IEA
GO:0006412 [list] [network] translation	(1842 genes)	IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(492 genes)	IEA
GO:0005840 [list] [network] ribosome	(1367 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding	(918 genes)	IEA
GO:0003735 [list] [network] structural constituent of ribosome	(1340 genes)	IEA

Protein

XP_013750370.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, cyto_nucl 5, nucl 2

(predict for XP_013750370.2)

Subcellular
localization
TargetP

other 9

(predict for XP_013750370.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106452747	ath-u.5 for AT2G39390	ath-u.5 for AT3G09500	ath-u.5 for AT3G55170	gma-u.5 for 100789845	gma-u.5 for 100305671	gma-u.5 for 100306624	vvi-u.5 for 100265729	vvi-u.5 for 100246718	ppo-u.5 for 7469794	ppo-u.5 for 7458614	ppo-u.5 for 7491950	mtr-u.5 for 11412433	mtr-u.5 for 25484086	mtr-u.5 for 11408161	sly-u.5 for 101267698	sly-u.5 for 101256286	sly-u.5 for 778319	osa-u.5 for 4335607	osa-u.5 for 4329423	zma-u.5 for 100281802	zma-u.5 for 100282133	zma-u.5 for 100282013

Ortholog

Ortholog ID: 1340

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

60S ribosomal protein L35-1

60S ribosomal protein L35-4

60S ribosomal protein L35-1

Ribosomal L29 family protein

60S ribosomal protein L35

60S ribosomal protein L35-like

60S ribosomal protein L35

uncharacterized LOC100305671

large ribosomal subunit protein uL29

60S ribosomal protein L35

60S ribosomal protein L35-like

large ribosomal subunit protein uL29

uncharacterized LOC102577759

60S ribosomal protein L35

large ribosomal subunit protein uL29

60S ribosomal protein L35

60S ribosomal protein L35-2

60S ribosomal protein L35-4

60S ribosomal protein L35-2

ribosomal protein L35

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	19
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	18
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	18
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	14
sly03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	11
sot00220	Arginine biosynthesis	2
sot00240	Pyrimidine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	13
nta04120	Ubiquitin mediated proteolysis	4
nta03018	RNA degradation	3
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	19
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	18

Expression

Expression pattern

Entrez Gene ID^*

106452747

106439191

103847436

103870540

818524

824683

107932419

107918620

102618448

102618082

100801539

100305671

100265729

100246718

7458614

7491950

11408161

11446573

778319

101256286

102577759

102586719

107822355

142166078

4329423

4335607

100282133

100282013

123189008

123053102

123426489

8056070

8059570

100824864

100820930

5715848

The preparation time of this page was 0.1 [sec].


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	3	3	2	3	3	3	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106452747 (bna-r.1 coexpression data)

Top 50 enrichment test to 106452747 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**