ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	107058230	uncharacterized LOC107058230
sot-r.1	102586569	uncharacterized LOC102586569
sot-r.1	102586240	uncharacterized LOC102586240
sly-u.5	101244861	uncharacterized LOC101244861
nta-r.1	107787586	uncharacterized LOC107787586
nta-r.1	107762467	uncharacterized LOC107762467
nta-r.1	107778985	uncharacterized LOC107778985
ath-u.5	AT2G43630	nucleusenvelope protein
ath-u.5	AT3G59640	glycine-rich protein
gma-u.5	100792974	uncharacterized LOC100792974
gma-u.5	100807775	uncharacterized LOC100807775
bra-r.6	103866095	uncharacterized LOC103866095
bra-r.6	103841809	uncharacterized LOC103841809
vvi-u.5	100264463	uncharacterized LOC100264463
ppo-u.5	18100151	uncharacterized LOC18100151
mtr-u.5	25482496	uncharacterized LOC25482496
mtr-u.5	11412298	uncharacterized LOC11412298
ghi-r.1	107941258	uncharacterized LOC107941258
ghi-r.1	107934382	uncharacterized LOC107934382
ghi-r.1	107938571	uncharacterized LOC107938571
bna-r.1	106429521	uncharacterized LOC106429521
bna-r.1	BNAC04G49110D	uncharacterized BNAC04G49110D
bna-r.1	111198642	uncharacterized LOC111198642
cit-r.1	102621679	hypothetical protein
osa-u.5	4329921	uncharacterized LOC4329921
osa-u.5	4336262	uncharacterized LOC4336262
zma-u.5	100193033	uncharacterized LOC100193033
zma-u.5	100272819	glycine-rich protein
tae-r.2	123045864	uncharacterized LOC123045864
tae-r.2	123053738	uncharacterized LOC123053738
tae-r.2	123127647	uncharacterized LOC123127647
hvu-r.1	123403155	uncharacterized LOC123403155
hvu-r.1	123427092	uncharacterized LOC123427092
sbi-r.1	110436094	uncharacterized LOC110436094
sbi-r.1	8072435	uncharacterized LOC8072435
bdi-r.1	100837136	uncharacterized LOC100837136
bdi-r.1	100842576	uncharacterized LOC100842576

Top 50 coexpressed genes to 107058230 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107058230 (sot-r.1 coexpression data)

CoexMap"107058230"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(606 genes)

IEA

GO MF

Protein

XP_015159172.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 2, cyto 2, mito 2, cyto_nucl 2, chlo 1, E.R. 1

(predict for XP_015159172.1)

Subcellular
localization
TargetP

other 9

(predict for XP_015159172.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 107058230	sot-r.1 for 102586569	sot-r.1 for 102586240	sly-u.5 for 101244861	nta-r.1 for 107787586	nta-r.1 for 107762467	nta-r.1 for 107778985	ath-u.5 for AT2G43630	ath-u.5 for AT3G59640	gma-u.5 for 100792974	gma-u.5 for 100807775	bra-r.6 for 103866095	bra-r.6 for 103841809	vvi-u.5 for 100264463	ppo-u.5 for 18100151	mtr-u.5 for 25482496	mtr-u.5 for 11412298	ghi-r.1 for 107941258	ghi-r.1 for 107934382	ghi-r.1 for 107938571	bna-r.1 for 106429521	bna-r.1 for BNAC04G49110D	bna-r.1 for 111198642	cit-r.1 for 102621679	osa-u.5 for 4329921	osa-u.5 for 4336262	zma-u.5 for 100193033	zma-u.5 for 100272819	tae-r.2 for 123045864	tae-r.2 for 123053738	tae-r.2 for 123127647	hvu-r.1 for 123403155	hvu-r.1 for 123427092	sbi-r.1 for 110436094	sbi-r.1 for 8072435	bdi-r.1 for 100837136	bdi-r.1 for 100842576

Ortholog

Ortholog ID: 4704

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC107058230

uncharacterized LOC102586569

uncharacterized LOC102586240

uncharacterized LOC101244861

uncharacterized LOC107787586

uncharacterized LOC107762467

uncharacterized LOC107778985

nucleusenvelope protein

glycine-rich protein

uncharacterized LOC100792974

uncharacterized LOC100807775

uncharacterized LOC103866095

uncharacterized LOC103841809

uncharacterized LOC100264463

uncharacterized LOC18100151

uncharacterized LOC25482496

uncharacterized LOC11412298

uncharacterized LOC107941258

uncharacterized LOC107934382

uncharacterized LOC107938571

uncharacterized LOC106429521

uncharacterized BNAC04G49110D

uncharacterized LOC106429297

hypothetical protein

uncharacterized LOC4329921

uncharacterized LOC4336262

uncharacterized LOC100193033

glycine-rich protein

uncharacterized LOC123127647

uncharacterized LOC123144760

uncharacterized LOC123189616

uncharacterized LOC123403155

uncharacterized LOC123427092

uncharacterized LOC110436094

uncharacterized LOC8072435

uncharacterized LOC100837136

uncharacterized LOC100842576

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	2
sot04145	Phagosome	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	4
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5
ath03018	RNA degradation	2
ath04626	Plant-pathogen interaction	2
ath03040	Spliceosome	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	4
bra03040	Spliceosome	3
bra04141	Protein processing in endoplasmic reticulum	3
bra04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00860	Porphyrin metabolism	3
vvi01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	3
mtr01200	Carbon metabolism	3
mtr01240	Biosynthesis of cofactors	2
mtr00020	Citrate cycle (TCA cycle)	2
mtr00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	3
tae00740	Riboflavin metabolism	2
tae00790	Folate biosynthesis	2
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00620	Pyruvate metabolism	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi01240	Biosynthesis of cofactors	2
bdi00250	Alanine, aspartate and glutamate metabolism	2
bdi01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

107058230

102586569

102586240

101244861

107787586

107762467

107778985

818965

825133

100792974

100807775

103866095

103841809

100264463

18100151

25482496

11412298

107941258

107934382

107938571

106429521

106391823

106429297

102621679

4329921

4336262

100193033

100272819

123127647

123144760

123189616

123403155

123427092

110436094

8072435

100837136

100842576

The preparation time of this page was 0.2 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	3	2	2	2	1	1	2	3	3	1	2	2	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107058230 (sot-r.1 coexpression data)

Top 50 enrichment test to 107058230 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**