ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123102753	uncharacterized LOC123102753
tae-r.2	123110924	uncharacterized LOC123110924
hvu-r.1	123452164	cell division protein FtsZ 1
bdi-r.1	100827606	general transcriptional corepressor CYC8
zma-u.5	103646558	uncharacterized LOC103646558
zma-u.5	100276166	uncharacterized LOC100276166
zma-u.5	100278828	uncharacterized LOC100278828
sbi-r.1	8063240	transcription factor SPT20 homolog
ath-u.5	AT3G03460	mediator of RNA polymerase II transcription subunit-like protein
ath-u.5	AT5G17510	mediator of RNA polymerase II transcription subunit-like protein
gma-u.5	100813084	probable E3 ubiquitin-protein ligase bre1
gma-u.5	100793492	probable E3 ubiquitin-protein ligase bre1
sly-u.5	101261996	uncharacterized LOC101261996
bra-r.6	103844231	putative mediator of RNA polymerase II transcription subunit 12
bra-r.6	103833180	putative mediator of RNA polymerase II transcription subunit 26
vvi-u.5	100249418	uncharacterized LOC100249418
ppo-u.5	7459201	uncharacterized LOC7459201
ppo-u.5	7465623	uncharacterized LOC7465623
mtr-u.5	25479439	transcription factor SPT20 homolog
ghi-r.1	121215351	putative mediator of RNA polymerase II transcription subunit 12
ghi-r.1	121225141	PH domain-containing protein DDB_G0275795
ghi-r.1	107950658	putative mediator of RNA polymerase II transcription subunit 26
bna-r.1	106385288	bromodomain-containing protein DDB_G0280777
bna-r.1	125606986	putative mediator of RNA polymerase II transcription subunit 12
bna-r.1	106387733	myb-like protein P
sot-r.1	102592223	bromodomain-containing protein DDB_G0280777
cit-r.1	102611901	uncharacterized LOC102611901
nta-r.1	107804691	uncharacterized LOC107804691
nta-r.1	107813252	uncharacterized LOC107813252
cre-r.1	CHLRE_17g715100v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0045893 [list] [network] positive regulation of DNA-templated transcription

(206 genes)

IEA

GO CC

GO:0016514 [list] [network] SWI/SNF complex

(8 genes)

IEA

GO MF

Protein

XP_015634824.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, mito 4, chlo 1, cyto 1

(predict for XP_015634824.1)

Subcellular
localization
TargetP

other 4, chlo 3

(predict for XP_015634824.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123102753	tae-r.2 for 123110924	hvu-r.1 for 123452164	bdi-r.1 for 100827606	zma-u.5 for 103646558	zma-u.5 for 100276166	zma-u.5 for 100278828	sbi-r.1 for 8063240	ath-u.5 for AT3G03460	ath-u.5 for AT5G17510	gma-u.5 for 100813084	gma-u.5 for 100793492	sly-u.5 for 101261996	bra-r.6 for 103844231	bra-r.6 for 103833180	vvi-u.5 for 100249418	ppo-u.5 for 7459201	ppo-u.5 for 7465623	mtr-u.5 for 25479439	ghi-r.1 for 121215351	ghi-r.1 for 121225141	ghi-r.1 for 107950658	bna-r.1 for 106385288	bna-r.1 for 125606986	bna-r.1 for 106387733	sot-r.1 for 102592223	cit-r.1 for 102611901	nta-r.1 for 107804691	nta-r.1 for 107813252	cre-r.1 for CHLRE_17g715100v5

Ortholog

Ortholog ID: 3929

Species

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC123102753

uncharacterized LOC123110924

cell division protein FtsZ 1

general transcriptional corepressor CYC8

uncharacterized LOC103646558

uncharacterized LOC100276166

uncharacterized LOC100278828

transcription factor SPT20 homolog

mediator of RNA polymerase II transcription subunit-like protein

probable E3 ubiquitin-protein ligase bre1

uncharacterized LOC101261996

putative mediator of RNA polymerase II transcription subunit 12

putative mediator of RNA polymerase II transcription subunit 26

uncharacterized LOC100249418

uncharacterized LOC7459201

uncharacterized LOC7465623

transcription factor SPT20 homolog

putative mediator of RNA polymerase II transcription subunit 12

putative mediator of RNA polymerase II transcription subunit 26

mastermind-like protein 2

putative mediator of RNA polymerase II transcription subunit 12

myb-like protein P

putative uncharacterized protein DDB_G0271606

bromodomain-containing protein DDB_G0280777

uncharacterized LOC102611901

uncharacterized LOC107804691

uncharacterized LOC107813252

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	7
tae04820	Cytoskeleton in muscle cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4
hvu03015	mRNA surveillance pathway	2
hvu04120	Ubiquitin mediated proteolysis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	5
bdi04144	Endocytosis	3
bdi03040	Spliceosome	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2
zma04120	Ubiquitin mediated proteolysis	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	5
sbi00020	Citrate cycle (TCA cycle)	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00941	Flavonoid biosynthesis	8
bra04712	Circadian rhythm - plant	3
bra00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03013	Nucleocytoplasmic transport	3
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	4
ghi03030	DNA replication	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	5

Expression

Expression pattern

Entrez Gene ID^*

123102753

123110924

123452164

100827606

103646558

100276166

100278828

8063240

821252

831617

100813084

100793492

101261996

103844231

103833180

100249418

7459201

7465623

25479439

121215351

107950658

107919987

125606986

106387733

106426201

102592223

102611901

107804691

107813252

5725995

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123102753 (tae-r.2 coexpression data)

Top 50 enrichment test to 123102753 (tae-r.2 coexpression data)


Species	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre	osa
Paralog	2	1	1	3	1	2	2	1	2	1	2	1	3	3	1	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123102753 (tae-r.2 coexpression data)

Top 50 enrichment test to 123102753 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**