ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	107521957	uncharacterized LOC107521957
zma-r.6	107521957	uncharacterized LOC107521957
zma-u.5	103649956	H/ACA ribonucleoprotein complex subunit 4
zma-u.5	100502498	H/ACA ribonucleoprotein complex subunit 4
sbi-r.1	8079384	H/ACA ribonucleoprotein complex subunit 4
sbi-r.1	8072420	H/ACA ribonucleoprotein complex subunit 4
osa-u.5	4332935	H/ACA ribonucleoprotein complex subunit 4
osa-u.5	4344029	H/ACA ribonucleoprotein complex subunit 4
tae-r.2	123051942	H/ACA ribonucleoprotein complex subunit 4
tae-r.2	123187822	H/ACA ribonucleoprotein complex subunit 4
tae-r.2	123051941	H/ACA ribonucleoprotein complex subunit 4
hvu-r.1	123425131	H/ACA ribonucleoprotein complex subunit 4-like
hvu-r.1	123425133	H/ACA ribonucleoprotein complex subunit 4-like
bdi-r.1	100838391	H/ACA ribonucleoprotein complex subunit 4
bdi-r.1	100832816	H/ACA ribonucleoprotein complex subunit 4
ath-u.5	NAP57	homologue of NAP57
gma-u.5	100806355	H/ACA ribonucleoprotein complex subunit 4
gma-u.5	100780706	H/ACA ribonucleoprotein complex subunit 4
sly-u.5	101255259	H/ACA ribonucleoprotein complex subunit 4
bra-r.6	103853527	H/ACA ribonucleoprotein complex subunit 4
bra-r.6	103830088	H/ACA ribonucleoprotein complex subunit 4
vvi-u.5	100258019	H/ACA ribonucleoprotein complex subunit 4
ppo-u.5	7458946	H/ACA ribonucleoprotein complex subunit 4
ppo-u.5	7473584	H/ACA ribonucleoprotein complex subunit 4
mtr-u.5	25492817	H/ACA ribonucleoprotein complex subunit 4
ghi-r.1	107891348	H/ACA ribonucleoprotein complex subunit 4
ghi-r.1	107889430	H/ACA ribonucleoprotein complex subunit 4
bna-r.1	106353240	H/ACA ribonucleoprotein complex subunit 4
bna-r.1	106391187	H/ACA ribonucleoprotein complex subunit 4-like
bna-r.1	106410714	H/ACA ribonucleoprotein complex subunit 4-like
sot-r.1	102596957	H/ACA ribonucleoprotein complex subunit 4
cit-r.1	102608573	H/ACA ribonucleoprotein complex subunit 4
nta-r.1	107765583	H/ACA ribonucleoprotein complex subunit 4
nta-r.1	107814582	H/ACA ribonucleoprotein complex subunit 4-like
cre-r.1	CHLRE_03g172950v5	uncharacterized protein

Top 50 coexpressed genes to 107521957 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107521957 (zma-u.5 coexpression data)

CoexMap"107521957"

[Cytoscape]

Annotation

functional annotation

KEGG

zma03008 [list] [network] Ribosome biogenesis in eukaryotes (2556 genes)

GO BP

GO:0000495 [list] [network] box H/ACA sno(s)RNA 3'-end processing	(3 genes)	IEA
GO:0031120 [list] [network] snRNA pseudouridine synthesis	(5 genes)	IEA
GO:1990481 [list] [network] mRNA pseudouridine synthesis	(7 genes)	IEA
GO:0031118 [list] [network] rRNA pseudouridine synthesis	(14 genes)	IEA

GO CC

GO:0031429 [list] [network] box H/ACA snoRNP complex

(7 genes)

IEA

GO MF

GO:0009982 [list] [network] pseudouridine synthase activity	(21 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1549 genes)	IEA

Protein

NP_001308752.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 1, nucl 1, plas 1, nucl_plas 1

(predict for NP_001308752.2)

Subcellular
localization
TargetP

other 7, chlo 5

(predict for NP_001308752.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 107521957	zma-r.6 for 107521957	zma-u.5 for 103649956	zma-u.5 for 100502498	sbi-r.1 for 8079384	sbi-r.1 for 8072420	osa-u.5 for 4332935	osa-u.5 for 4344029	tae-r.2 for 123051942	tae-r.2 for 123187822	tae-r.2 for 123051941	hvu-r.1 for 123425131	hvu-r.1 for 123425133	bdi-r.1 for 100838391	bdi-r.1 for 100832816	ath-u.5 for NAP57	gma-u.5 for 100806355	gma-u.5 for 100780706	sly-u.5 for 101255259	bra-r.6 for 103853527	bra-r.6 for 103830088	vvi-u.5 for 100258019	ppo-u.5 for 7458946	ppo-u.5 for 7473584	mtr-u.5 for 25492817	ghi-r.1 for 107891348	ghi-r.1 for 107889430	bna-r.1 for 106353240	bna-r.1 for 106391187	bna-r.1 for 106410714	sot-r.1 for 102596957	cit-r.1 for 102608573	nta-r.1 for 107765583	nta-r.1 for 107814582	cre-r.1 for CHLRE_03g172950v5

Ortholog

Ortholog ID: 5332

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

NAP57

Function^*

uncharacterized LOC107521957

H/ACA ribonucleoprotein complex subunit 4

H/ACA ribonucleoprotein complex subunit 4-like

H/ACA ribonucleoprotein complex subunit 4

homologue of NAP57

H/ACA ribonucleoprotein complex subunit 4

H/ACA ribonucleoprotein complex subunit 4-like

H/ACA ribonucleoprotein complex subunit 4

H/ACA ribonucleoprotein complex subunit 4-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	9
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	5
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	8
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	8
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	7

Expression

Expression pattern

Entrez Gene ID^*

107521957

103649956

100502498

8079384

8072420

4332935

4344029

123187822

123051941

123187823

123425131

123425133

100838391

100832816

824882

100806355

100780706

101255259

103853527

103830088

100258019

7458946

7473584

25492817

107891348

107889430

106353240

106391187

106401912

102596957

102608573

107765583

107814582

5728904

The preparation time of this page was 0.1 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	3	2	2	1	2	1	2	1	2	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107521957 (zma-u.5 coexpression data)

Top 50 enrichment test to 107521957 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**