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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103854906   protein TRANSPARENT TESTA 16-like 
 bra-r.6   103865402   protein TRANSPARENT TESTA 16 
 mtr-u.5   11433884   protein TRANSPARENT TESTA 16 
 ghi-r.1   121228230   protein TRANSPARENT TESTA 16 
 ghi-r.1   107918783   protein TRANSPARENT TESTA 16-like 
 ghi-r.1   107898867   protein TRANSPARENT TESTA 16-like 
 bna-r.1   125607076   protein TRANSPARENT TESTA 16-like 
 bna-r.1   106359505   protein TRANSPARENT TESTA 16-like 
 bna-r.1   106444269   protein TRANSPARENT TESTA 16 
 cit-r.1   102614986   MADS-box protein defh21-like 
 osa-u.5   4336981   MADS-box transcription factor 31-like 
 zma-u.5   100272346   uncharacterized LOC100272346 
 tae-r.2   123130495   MADS-box transcription factor 29 
 bdi-r.1   100822441   MADS-box transcription factor 29-like 

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Top 50 coexpressed genes to 103854906 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103854906 (bra-r.6 coexpression data)

CoexMap"107760871"


ntaLOC107760871 | Entrez gene ID : 107760871      
Species bra mtr ghi bna cit osa zma tae bdi gma sot cre ppo sbi sly ath nta hvu vvi
Paralog 2 1 3 3 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (239 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4980 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (454 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1129 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2091 genes)  IEA  
Protein XP_016434468.1 [sequence] [blastp]
XP_075088571.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016434468.1)
nucl 9  (predict for XP_075088571.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016434468.1)
other 7  (predict for XP_075088571.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103854906
bra-r.6
for
103865402
mtr-u.5
for
11433884
ghi-r.1
for
121228230
ghi-r.1
for
107918783
ghi-r.1
for
107898867
bna-r.1
for
125607076
bna-r.1
for
106359505
bna-r.1
for
106444269
cit-r.1
for
102614986
osa-u.5
for
4336981
zma-u.5
for
100272346
tae-r.2
for
123130495
bdi-r.1
for
100822441


Ortholog ID: 3264
Species bra bra mtr ghi ghi ghi bna bna bna cit osa tae bdi
Symbol LOC103854906 LOC103865402 LOC11433884 LOC121228230 LOC107918783 LOC107894052 LOC106425709 LOC106380103 LOC106366053 LOC102614986 LOC4336981 LOC780650 LOC100822441
Function* protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 MADS-box protein defh21-like MADS-box transcription factor 31-like MADS-box transcription factor 29 MADS-box transcription factor 29-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00053 Ascorbate and aldarate metabolism 2
osa00480 Glutathione metabolism 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103854906 103865402 11433884 121228230 107918783 107894052 106425709 106380103 106366053 102614986 4336981 780650 100822441
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