ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107777784	putative polygalacturonase
nta-r.1	107789698	putative polygalacturonase
nta-r.1	107826279	putative polygalacturonase
nta-r.1	107824442	putative polygalacturonase
sly-u.5	101255793	probable polygalacturonase
sly-u.5	101258597	probable polygalacturonase
sly-u.5	101265204	probable polygalacturonase
sot-r.1	102583279	probable polygalacturonase
sot-r.1	102584705	probable polygalacturonase
sot-r.1	102581240	probable polygalacturonase
ath-u.5	AT2G23900	Pectin lyase-like superfamily protein
ath-u.5	AT3G61490	Pectin lyase-like superfamily protein
gma-u.5	100818998	probable polygalacturonase
gma-u.5	100816232	probable polygalacturonase
bra-r.6	103841972	probable polygalacturonase
bra-r.6	103861130	probable polygalacturonase
bra-r.6	103861401	probable polygalacturonase
vvi-u.5	100852885	probable polygalacturonase
vvi-u.5	100255362	probable polygalacturonase
ppo-u.5	7497216	probable polygalacturonase
ppo-u.5	7497800	probable polygalacturonase
ppo-u.5	7472748	probable polygalacturonase
ghi-r.1	107923473	probable polygalacturonase
ghi-r.1	107923871	probable polygalacturonase
ghi-r.1	107904590	probable polygalacturonase
bna-r.1	111203679	probable polygalacturonase
bna-r.1	125586355	probable polygalacturonase
cit-r.1	102616450	probable polygalacturonase
cit-r.1	102617191	probable polygalacturonase
cit-r.1	102629244	probable polygalacturonase
osa-u.5	4331458	probable polygalacturonase
osa-u.5	4339868	probable polygalacturonase
zma-u.5	100284735	glycoside hydrolase, family 28
zma-u.5	100284797	glycoside hydrolase, family 28
tae-r.2	123088500	probable polygalacturonase
tae-r.2	123093755	probable polygalacturonase
tae-r.2	123098989	probable polygalacturonase
hvu-r.1	123449865	probable polygalacturonase
hvu-r.1	123413604	probable polygalacturonase
sbi-r.1	8066875	probable polygalacturonase
sbi-r.1	8085717	probable polygalacturonase
bdi-r.1	100836905	probable polygalacturonase

Top 50 coexpressed genes to 107777784 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107777784 (nta-r.1 coexpression data)

CoexMap"107777784"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(1425 genes)

IEA

GO CC

GO MF

GO:0004650 [list] [network] polygalacturonase activity

(108 genes)

IEA

Protein

XP_016453410.1 [sequence] [blastp]
XP_075083760.1 [sequence] [blastp]
XP_075083761.1 [sequence] [blastp]
XP_075083762.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 2, cyto_nucl 2, nucl 1, plas 1, vacu 1, chlo 1, mito 1, extr 1, pero 1, chlo_mito 1, golg_plas 1, E.R._vacu 1, cysk_plas 1, E.R._plas 1	(predict for XP_016453410.1)
vacu 3, extr 2, E.R._vacu 2, chlo 1, E.R. 1, golg 1	(predict for XP_075083760.1)
extr 3, E.R. 2, vacu 1, golg 1, E.R._plas 1	(predict for XP_075083761.1)
extr 3, E.R. 2, vacu 1, golg 1, E.R._plas 1	(predict for XP_075083762.1)

Subcellular
localization
TargetP

scret 5, other 3	(predict for XP_016453410.1)
scret 9	(predict for XP_075083760.1)
scret 8	(predict for XP_075083761.1)
scret 8	(predict for XP_075083762.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107777784	nta-r.1 for 107789698	nta-r.1 for 107826279	nta-r.1 for 107824442	sly-u.5 for 101255793	sly-u.5 for 101258597	sly-u.5 for 101265204	sot-r.1 for 102583279	sot-r.1 for 102584705	sot-r.1 for 102581240	ath-u.5 for AT2G23900	ath-u.5 for AT3G61490	gma-u.5 for 100818998	gma-u.5 for 100816232	bra-r.6 for 103841972	bra-r.6 for 103861130	bra-r.6 for 103861401	vvi-u.5 for 100852885	vvi-u.5 for 100255362	ppo-u.5 for 7497216	ppo-u.5 for 7497800	ppo-u.5 for 7472748	ghi-r.1 for 107923473	ghi-r.1 for 107923871	ghi-r.1 for 107904590	bna-r.1 for 111203679	bna-r.1 for 125586355	cit-r.1 for 102616450	cit-r.1 for 102617191	cit-r.1 for 102629244	osa-u.5 for 4331458	osa-u.5 for 4339868	zma-u.5 for 100284735	zma-u.5 for 100284797	tae-r.2 for 123088500	tae-r.2 for 123093755	tae-r.2 for 123098989	hvu-r.1 for 123449865	hvu-r.1 for 123413604	sbi-r.1 for 8066875	sbi-r.1 for 8085717	bdi-r.1 for 100836905

Ortholog

Ortholog ID: 930

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

putative polygalacturonase

probable polygalacturonase

Pectin lyase-like superfamily protein

probable polygalacturonase

glycoside hydrolase, family 28

probable polygalacturonase

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2
nta00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00511	Other glycan degradation	2
nta00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2
sly00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	7
sot00360	Phenylalanine metabolism	3
sot00941	Flavonoid biosynthesis	2
sot00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00061	Fatty acid biosynthesis	3
bra01212	Fatty acid metabolism	3
bra00620	Pyruvate metabolism	3
bra00640	Propanoate metabolism	3
bra01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	2
ghi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00564	Glycerophospholipid metabolism	2
ghi00565	Ether lipid metabolism	2
ghi00590	Arachidonic acid metabolism	2
ghi00591	Linoleic acid metabolism	2
ghi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	2
bna00040	Pentose and glucuronate interconversions	2
bna00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	2
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	2

Expression

Expression pattern

Entrez Gene ID^*

107824442

107770152

107808842

101258597

101265204

101247546

102583279

102584705

102579922

816922

825322

828450

100787980

100794916

103861130

103861401

103873101

100852885

100255362

7497216

7497800

107923473

107947807

121223705

106441268

106446613

102617191

102629244

127900536

4331458

4339868

100284735

100284797

123088500

123098989

123105925

123449865

123413604

8066875

8085717

100836905

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	mtr	cre
Paralog	4	3	3	2	2	3	2	3	3	2	3	2	2	3	2	2	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107777784 (nta-r.1 coexpression data)

Top 50 enrichment test to 107777784 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**