ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8085717	probable polygalacturonase
sbi-r.1	8066875	probable polygalacturonase
zma-u.5	100284797	glycoside hydrolase, family 28
zma-u.5	100284735	glycoside hydrolase, family 28
osa-u.5	4331458	probable polygalacturonase
osa-u.5	4339868	probable polygalacturonase
tae-r.2	123088500	probable polygalacturonase
tae-r.2	123093755	probable polygalacturonase
tae-r.2	123098989	probable polygalacturonase
hvu-r.1	123449865	probable polygalacturonase
hvu-r.1	123413604	probable polygalacturonase
bdi-r.1	100836905	probable polygalacturonase
ath-u.5	AT2G23900	Pectin lyase-like superfamily protein
ath-u.5	AT3G61490	Pectin lyase-like superfamily protein
gma-u.5	100818998	probable polygalacturonase
gma-u.5	100816232	probable polygalacturonase
gma-u.5	100776827	probable polygalacturonase
sly-u.5	101258597	probable polygalacturonase
sly-u.5	101247546	probable polygalacturonase
bra-r.6	103873101	probable polygalacturonase
bra-r.6	103861401	probable polygalacturonase
vvi-u.5	100262858	probable polygalacturonase
vvi-u.5	100255362	probable polygalacturonase
ppo-u.5	7497216	probable polygalacturonase
ppo-u.5	7497800	probable polygalacturonase
ppo-u.5	7472748	probable polygalacturonase
ghi-r.1	107923473	probable polygalacturonase
ghi-r.1	107904590	probable polygalacturonase
ghi-r.1	107923871	probable polygalacturonase
bna-r.1	111203679	probable polygalacturonase
bna-r.1	125586355	probable polygalacturonase
bna-r.1	106360441	probable polygalacturonase
sot-r.1	102584705	probable polygalacturonase
sot-r.1	102583279	probable polygalacturonase
sot-r.1	102579922	probable polygalacturonase
cit-r.1	127900536	probable polygalacturonase
cit-r.1	102629244	probable polygalacturonase
cit-r.1	102617191	probable polygalacturonase
nta-r.1	107789698	putative polygalacturonase
nta-r.1	107770152	putative polygalacturonase
nta-r.1	107826279	putative polygalacturonase

Top 50 coexpressed genes to 8085717 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8085717 (sbi-r.1 coexpression data)

CoexMap"8085717"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(729 genes)

IEA

GO CC

GO MF

GO:0004650 [list] [network] polygalacturonase activity

(40 genes)

IEA

Protein

XP_002468601.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, extr 3, vacu 2, chlo_mito 2

(predict for XP_002468601.1)

Subcellular
localization
TargetP

scret 9, mito 4

(predict for XP_002468601.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8085717	sbi-r.1 for 8066875	zma-u.5 for 100284797	zma-u.5 for 100284735	osa-u.5 for 4331458	osa-u.5 for 4339868	tae-r.2 for 123088500	tae-r.2 for 123093755	tae-r.2 for 123098989	hvu-r.1 for 123449865	hvu-r.1 for 123413604	bdi-r.1 for 100836905	ath-u.5 for AT2G23900	ath-u.5 for AT3G61490	gma-u.5 for 100818998	gma-u.5 for 100816232	gma-u.5 for 100776827	sly-u.5 for 101258597	sly-u.5 for 101247546	bra-r.6 for 103873101	bra-r.6 for 103861401	vvi-u.5 for 100262858	vvi-u.5 for 100255362	ppo-u.5 for 7497216	ppo-u.5 for 7497800	ppo-u.5 for 7472748	ghi-r.1 for 107923473	ghi-r.1 for 107904590	ghi-r.1 for 107923871	bna-r.1 for 111203679	bna-r.1 for 125586355	bna-r.1 for 106360441	sot-r.1 for 102584705	sot-r.1 for 102583279	sot-r.1 for 102579922	cit-r.1 for 127900536	cit-r.1 for 102629244	cit-r.1 for 102617191	nta-r.1 for 107789698	nta-r.1 for 107770152	nta-r.1 for 107826279

Ortholog

Ortholog ID: 930

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

ghi

bna

sot

cit

nta

Symbol

Function^*

probable polygalacturonase

glycoside hydrolase, family 28

probable polygalacturonase

Pectin lyase-like superfamily protein

probable polygalacturonase

putative polygalacturonase

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	2
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2
sly00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00061	Fatty acid biosynthesis	3
bra01212	Fatty acid metabolism	3
bra00620	Pyruvate metabolism	3
bra00640	Propanoate metabolism	3
bra01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	2
ghi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00564	Glycerophospholipid metabolism	2
ghi00565	Ether lipid metabolism	2
ghi00590	Arachidonic acid metabolism	2
ghi00591	Linoleic acid metabolism	2
ghi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	2
bna00040	Pentose and glucuronate interconversions	2
bna00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	7
sot00360	Phenylalanine metabolism	3
sot00941	Flavonoid biosynthesis	2
sot00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2
nta00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00511	Other glycan degradation	2
nta00040	Pentose and glucuronate interconversions	2

Expression

Expression pattern

Entrez Gene ID^*

8085717

8066875

100284797

100284735

4331458

4339868

123088500

123098989

123105925

123449865

123413604

100836905

816922

825322

828450

100787980

100794916

101258597

101247546

101265204

103873101

103861401

103861130

100255362

100852885

7497216

7497800

107923473

107947807

121223705

106441268

106446613

102584705

102583279

102579922

127900536

102629244

102617191

107770152

107824442

107808842

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	ghi	bna	sot	cit	nta	cre	mtr
Paralog	2	2	2	3	2	1	2	3	2	2	2	3	3	3	3	3	3	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8085717 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8085717 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**