ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107783697	ubiquitin receptor RAD23d
sly-u.5	101251966	ubiquitin receptor RAD23b
sly-u.5	RAD23d	ubiquitin receptor RAD23d
sly-u.5	101249452	ubiquitin receptor RAD23c
ath-u.5	RAD23C	Rad23 UV excision repair protein family
ath-u.5	RAD23D	Rad23 UV excision repair protein family
ath-u.5	RAD23A	Rad23 UV excision repair protein family
gma-u.5	100819019	putative DNA repair protein RAD23-1-like
gma-u.5	100818012	ubiquitin receptor RAD23c
gma-u.5	100817821	ubiquitin receptor RAD23d
vvi-u.5	100267246	ubiquitin receptor RAD23b
vvi-u.5	100245820	ubiquitin receptor RAD23c
vvi-u.5	100244610	ubiquitin receptor RAD23c
ppo-u.5	7489348	ubiquitin receptor RAD23d
ppo-u.5	7476798	ubiquitin receptor RAD23b
ppo-u.5	7488352	ubiquitin receptor RAD23d
mtr-u.5	25488002	ubiquitin receptor RAD23b
mtr-u.5	25499820	ubiquitin receptor RAD23d
mtr-u.5	112418701	ubiquitin receptor RAD23b
osa-u.5	4340699	ubiquitin receptor RAD23d
osa-u.5	4328500	ubiquitin receptor RAD23b
osa-u.5	4345632	probable ubiquitin receptor RAD23
zma-u.5	100282762	uncharacterized LOC100282762
zma-u.5	100282427	uncharacterized LOC100282427
zma-u.5	100274222	DNA repair protein RAD23

Top 50 coexpressed genes to 107783697 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107783697 (nta-r.1 coexpression data)

CoexMap"107783697"

[Cytoscape]

Annotation

functional annotation

KEGG

nta03420 [list] [network] Nucleotide excision repair (148 genes)

nta04141 [list] [network] Protein processing in endoplasmic reticulum (495 genes)

GO BP

GO:0006289 [list] [network] nucleotide-excision repair	(76 genes)	IEA
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process	(236 genes)	IEA

GO CC

GO:0005654 [list] [network] nucleoplasm	(321 genes)	IEA
GO:0005829 [list] [network] cytosol	(1509 genes)	IEA

GO MF

GO:0070628 [list] [network] proteasome binding	(23 genes)	IEA
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding	(55 genes)	IEA
GO:0003684 [list] [network] damaged DNA binding	(66 genes)	IEA
GO:0043130 [list] [network] ubiquitin binding	(112 genes)	IEA

Protein

XP_016460196.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, mito 4, nucl 1, cyto_mito 1, cyto_pero 1, cyto_E.R. 1

(predict for XP_016460196.1)

Subcellular
localization
TargetP

other 9

(predict for XP_016460196.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107783697	sly-u.5 for 101251966	sly-u.5 for RAD23d	sly-u.5 for 101249452	ath-u.5 for RAD23C	ath-u.5 for RAD23D	ath-u.5 for RAD23A	gma-u.5 for 100819019	gma-u.5 for 100818012	gma-u.5 for 100817821	vvi-u.5 for 100267246	vvi-u.5 for 100245820	vvi-u.5 for 100244610	ppo-u.5 for 7489348	ppo-u.5 for 7476798	ppo-u.5 for 7488352	mtr-u.5 for 25488002	mtr-u.5 for 25499820	mtr-u.5 for 112418701	osa-u.5 for 4340699	osa-u.5 for 4328500	osa-u.5 for 4345632	zma-u.5 for 100282762	zma-u.5 for 100282427	zma-u.5 for 100274222

Ortholog

Ortholog ID: 748

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RAD23d

RAD23B

RAD23D

Function^*

ubiquitin receptor RAD23d

ubiquitin receptor RAD23b

uncharacterized LOC102577665

ubiquitin receptor RAD23d

Rad23 UV excision repair protein family

ubiquitin receptor RAD23c-like

putative DNA repair protein RAD23-1-like

ubiquitin receptor RAD23c

probable ubiquitin receptor RAD23a

ubiquitin receptor RAD23c

ubiquitin receptor RAD23b

ubiquitin receptor RAD23d

ubiquitin receptor RAD23b

ubiquitin receptor RAD23c-like

probable ubiquitin receptor RAD23

ubiquitin receptor RAD23b

uncharacterized LOC100283179

DNA repair protein RAD23

ubiquitin receptor RAD23b

probable ubiquitin receptor RAD23

ubiquitin receptor RAD23d-like

ubiquitin receptor RAD23b

ubiquitin receptor RAD23d

probable ubiquitin receptor RAD23

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	5
nta03420	Nucleotide excision repair	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	4
nta04070	Phosphatidylinositol signaling system	4
nta04075	Plant hormone signal transduction	4
nta04626	Plant-pathogen interaction	4
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03420	Nucleotide excision repair	2
sly04141	Protein processing in endoplasmic reticulum	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03420	Nucleotide excision repair	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03420	Nucleotide excision repair	2
sot04141	Protein processing in endoplasmic reticulum	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath04141	Protein processing in endoplasmic reticulum	3
ath04382	Cornified envelope formation	2
ath03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	11
ath04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	5
gma04141	Protein processing in endoplasmic reticulum	5
gma03420	Nucleotide excision repair	4
gma00030	Pentose phosphate pathway	2
gma00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2
gma03420	Nucleotide excision repair	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	3
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	3
vvi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	5
ppo04144	Endocytosis	3
ppo03083	Polycomb repressive complex	3
ppo04120	Ubiquitin mediated proteolysis	3
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo03420	Nucleotide excision repair	2
ppo04141	Protein processing in endoplasmic reticulum	2
ppo03008	Ribosome biogenesis in eukaryotes	2
ppo00220	Arginine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	7
mtr03010	Ribosome	3
mtr03420	Nucleotide excision repair	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03420	Nucleotide excision repair	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi00030	Pentose phosphate pathway	2
ghi00230	Purine metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03420	Nucleotide excision repair	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi00030	Pentose phosphate pathway	2
ghi00230	Purine metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03420	Nucleotide excision repair	4
bna04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03420	Nucleotide excision repair	4
bna04141	Protein processing in endoplasmic reticulum	4
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit00970	Aminoacyl-tRNA biosynthesis	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2
cit03008	Ribosome biogenesis in eukaryotes	2
cit04712	Circadian rhythm - plant	2
cit03015	mRNA surveillance pathway	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	3
osa03420	Nucleotide excision repair	3
osa03410	Base excision repair	2
osa03082	ATP-dependent chromatin remodeling	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	2
zma04141	Protein processing in endoplasmic reticulum	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	11
zma03420	Nucleotide excision repair	2
zma04141	Protein processing in endoplasmic reticulum	2
zma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03420	Nucleotide excision repair	3
tae03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	11
tae03420	Nucleotide excision repair	3
tae04141	Protein processing in endoplasmic reticulum	3
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2
hvu03013	Nucleocytoplasmic transport	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	7
sbi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	4
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	13
cre04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

107796487

107783697

101246007

101251966

102577665

102604588

844304

833835

100813881

100819019

103858967

103842858

100245820

100244610

18099502

7476798

25488002

112418701

107891755

107913821

106429448

106352651

102620700

102614644

4345632

4328500

100283179

100274222

123136563

123121483

123396360

123407404

110430980

8079399

100838271

100830156

5721666

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Species	nta	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	cre	tae
Paralog	1	3	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107783697 (nta-r.1 coexpression data)

Top 50 enrichment test to 107783697 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**