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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107785853   28 kDa ribonucleoprotein, chloroplastic-like 
 nta-r.1   107798585   28 kDa ribonucleoprotein, chloroplastic 
 sly-u.5   101266507   28 kDa ribonucleoprotein, chloroplastic 
 sot-r.1   102590165   28 kDa ribonucleoprotein, chloroplastic 
 ath-u.5   AT4G09040   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100806480   28 kDa ribonucleoprotein, chloroplastic 
 gma-u.5   100790439   RNA-binding protein CP31B, chloroplastic 
 vvi-u.5   100248931   29 kDa ribonucleoprotein A, chloroplastic 
 ppo-u.5   7486573   28 kDa ribonucleoprotein, chloroplastic 
 mtr-u.5   11431177   28 kDa ribonucleoprotein, chloroplastic 
 ghi-r.1   107917079   28 kDa ribonucleoprotein, chloroplastic 
 ghi-r.1   107921121   28 kDa ribonucleoprotein, chloroplastic 
 bna-r.1   106360973   RNA-binding protein CP33, chloroplastic-like 
 bna-r.1   106422136   RNA-binding protein CP33, chloroplastic 
 cit-r.1   102615204   30S ribosomal protein 2, chloroplastic 
 osa-u.5   4345863   RNA-binding protein CP33, chloroplastic 
 zma-u.5   100283883   uncharacterized LOC100283883 
 tae-r.2   123144811   RNA-binding protein CP33, chloroplastic 
 tae-r.2   123137455   RNA-binding protein CP33, chloroplastic 
 tae-r.2   123127786   RNA-binding protein CP33, chloroplastic 
 hvu-r.1   123403494   RNA-binding protein CP33, chloroplastic-like 
 sbi-r.1   8055386   RNA-binding protein CP33, chloroplastic 
 bdi-r.1   100839716   29 kDa ribonucleoprotein, chloroplastic 

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Top 50 coexpressed genes to 107785853 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107785853 (nta-r.1 coexpression data)

CoexMap"107785853"


ntaLOC107785853 | Entrez gene ID : 107785853      
Species nta sly sot ath gma vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi bra cre
Paralog 2 1 1 1 2 1 1 1 2 2 1 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (29 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (195 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (573 genes)  IEA  
Protein XP_016462728.1 [sequence] [blastp]
XP_075088832.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1  (predict for XP_016462728.1)
chlo 8,  nucl 1  (predict for XP_075088832.1)
Subcellular
localization
TargetP
chlo 7,  mito 3  (predict for XP_016462728.1)
chlo 7,  mito 3  (predict for XP_075088832.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107785853
nta-r.1
for
107798585
sly-u.5
for
101266507
sot-r.1
for
102590165
ath-u.5
for
AT4G09040
gma-u.5
for
100806480
gma-u.5
for
100790439
vvi-u.5
for
100248931
ppo-u.5
for
7486573
mtr-u.5
for
11431177
ghi-r.1
for
107917079
ghi-r.1
for
107921121
bna-r.1
for
106360973
bna-r.1
for
106422136
cit-r.1
for
102615204
osa-u.5
for
4345863
zma-u.5
for
100283883
tae-r.2
for
123144811
tae-r.2
for
123137455
tae-r.2
for
123127786
hvu-r.1
for
123403494
sbi-r.1
for
8055386
bdi-r.1
for
100839716


Ortholog ID: 10846
Species nta nta sly sot ath gma gma vvi ppo mtr ghi ghi bna bna cit osa zma tae tae tae hvu sbi bdi
Symbol LOC107785853 LOC107798585 LOC101266507 LOC102590165 AT4G09040 LOC100806480 LOC100790439 LOC100248931 LOC7486573 LOC11431177 LOC107917079 LOC107921121 LOC106360973 LOC106422136 LOC102615204 LOC4345863 LOC100283883 LOC123144811 LOC123137455 LOC123127786 LOC123403494 LOC8055386 LOC100839716
Function* 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein 28 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP31B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP33, chloroplastic-like RNA-binding protein CP33, chloroplastic 30S ribosomal protein 2, chloroplastic RNA-binding protein CP33, chloroplastic uncharacterized LOC100283883 RNA-binding protein CP33, chloroplastic RNA-binding protein CP33, chloroplastic RNA-binding protein CP33, chloroplastic RNA-binding protein CP33, chloroplastic-like RNA-binding protein CP33, chloroplastic 29 kDa ribonucleoprotein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo00860 Porphyrin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00650 Butanoate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
cit00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03015 mRNA surveillance pathway 3
tae00860 Porphyrin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 4
tae01240 Biosynthesis of cofactors 4
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 3
sbi00730 Thiamine metabolism 2
sbi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107785853 107798585 101266507 102590165 826483 100806480 100790439 100248931 7486573 11431177 107917079 107921121 106360973 106422136 102615204 4345863 100283883 123144811 123137455 123127786 123403494 8055386 100839716
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