ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107789322	nuclear transcription factor Y subunit A-4-like
nta-r.1	107764454	nuclear transcription factor Y subunit A-6-like
nta-r.1	107795403	nuclear transcription factor Y subunit A-3
nta-r.1	107809359	nuclear transcription factor Y subunit A-6
sly-u.5	101246742	nuclear transcription factor Y subunit A-8
sly-u.5	101259926	nuclear transcription factor Y subunit A-4
sly-u.5	101247294	nuclear transcription factor Y subunit A-7-like
sot-r.1	102595015	nuclear transcription factor Y subunit A-7-like
sot-r.1	102578385	nuclear transcription factor Y subunit A-3-like
sot-r.1	102605535	nuclear transcription factor Y subunit A-8-like
ath-u.5	NF-YA8	nuclear factor Y, subunit A8
ath-u.5	NF-YA3	nuclear factor Y, subunit A3
gma-u.5	NF-YA09	nuclear transcription factor Y subunit A-9
gma-u.5	NF-YA12	nuclear transcription factor Y subunit A-12
gma-u.5	NF-YA19	nuclear transcription factor Y subunit A-19
bra-r.6	103852805	nuclear transcription factor Y subunit A-3
bra-r.6	103842742	nuclear transcription factor Y subunit A-8
bra-r.6	103831785	nuclear transcription factor Y subunit A-3
vvi-u.5	100249800	nuclear transcription factor Y subunit A-3
vvi-u.5	100249054	nuclear transcription factor Y subunit A-4
ppo-u.5	7490523	nuclear transcription factor Y subunit A-3
ppo-u.5	7484645	nuclear transcription factor Y subunit A-4
mtr-u.5	11433420	nuclear transcription factor Y subunit A-8
ghi-r.1	107897708	nuclear transcription factor Y subunit A-7
ghi-r.1	107901084	nuclear transcription factor Y subunit A-7
ghi-r.1	107902490	nuclear transcription factor Y subunit A-3
bna-r.1	111212677	nuclear transcription factor Y subunit A-8
bna-r.1	106399653	nuclear transcription factor Y subunit A-3-like
bna-r.1	106431642	nuclear transcription factor Y subunit A-5
cit-r.1	102611325	nuclear transcription factor Y subunit A-3
osa-u.5	4331796	nuclear transcription factor Y subunit A-7
osa-u.5	9270863	nuclear transcription factor Y subunit A-4
osa-u.5	4333094	nuclear transcription factor Y subunit A-4
zma-u.5	100282696	nuclear transcription factor Y subunit A-3
zma-u.5	100280919	nuclear transcription factor Y subunit A-3
zma-u.5	103644713	nuclear transcription factor Y subunit A-7
tae-r.2	123044247	nuclear transcription factor Y subunit A-7
tae-r.2	123052125	nuclear transcription factor Y subunit A-7
tae-r.2	123128600	nuclear transcription factor Y subunit A-4
hvu-r.1	123403683	nuclear transcription factor Y subunit A-4-like
hvu-r.1	123425358	nuclear transcription factor Y subunit A-7-like
sbi-r.1	8081931	nuclear transcription factor Y subunit A-5
sbi-r.1	8080415	nuclear transcription factor Y subunit A-4
sbi-r.1	8079173	nuclear transcription factor Y subunit A-3
bdi-r.1	100832222	nuclear transcription factor Y subunit A-4
bdi-r.1	100846922	nuclear transcription factor Y subunit A-4

Top 50 coexpressed genes to 107789322 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107789322 (nta-r.1 coexpression data)

CoexMap"107789322"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(2987 genes)

IEA

GO CC

GO:0016602 [list] [network] CCAAT-binding factor complex

(41 genes)

IEA

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(2091 genes)	IEA
GO:0003677 [list] [network] DNA binding	(3714 genes)	IEA

Protein

XP_016466591.1 [sequence] [blastp]
XP_016466592.1 [sequence] [blastp]
XP_016466593.1 [sequence] [blastp]
XP_016466594.1 [sequence] [blastp]
XP_016466595.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto_nucl 4, chlo 1	(predict for XP_016466591.1)
nucl 7, cyto_nucl 4, chlo 1	(predict for XP_016466592.1)
nucl 7, cyto_nucl 4, chlo 1	(predict for XP_016466593.1)
nucl 7, cyto_nucl 4, chlo 1	(predict for XP_016466594.1)
nucl 7, cyto_nucl 4, chlo 1	(predict for XP_016466595.1)

Subcellular
localization
TargetP

chlo 5, mito 4	(predict for XP_016466591.1)
chlo 5, mito 4	(predict for XP_016466592.1)
chlo 5, mito 4	(predict for XP_016466593.1)
chlo 5, mito 4	(predict for XP_016466594.1)
chlo 5, mito 4	(predict for XP_016466595.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107789322	nta-r.1 for 107764454	nta-r.1 for 107795403	nta-r.1 for 107809359	sly-u.5 for 101246742	sly-u.5 for 101259926	sly-u.5 for 101247294	sot-r.1 for 102595015	sot-r.1 for 102578385	sot-r.1 for 102605535	ath-u.5 for NF-YA8	ath-u.5 for NF-YA3	gma-u.5 for NF-YA09	gma-u.5 for NF-YA12	gma-u.5 for NF-YA19	bra-r.6 for 103852805	bra-r.6 for 103842742	bra-r.6 for 103831785	vvi-u.5 for 100249800	vvi-u.5 for 100249054	ppo-u.5 for 7490523	ppo-u.5 for 7484645	mtr-u.5 for 11433420	ghi-r.1 for 107897708	ghi-r.1 for 107901084	ghi-r.1 for 107902490	bna-r.1 for 111212677	bna-r.1 for 106399653	bna-r.1 for 106431642	cit-r.1 for 102611325	osa-u.5 for 4331796	osa-u.5 for 9270863	osa-u.5 for 4333094	zma-u.5 for 100282696	zma-u.5 for 100280919	zma-u.5 for 103644713	tae-r.2 for 123044247	tae-r.2 for 123052125	tae-r.2 for 123128600	hvu-r.1 for 123403683	hvu-r.1 for 123425358	sbi-r.1 for 8081931	sbi-r.1 for 8080415	sbi-r.1 for 8079173	bdi-r.1 for 100832222	bdi-r.1 for 100846922

Ortholog

Ortholog ID: 1722

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

NF-YA8

NF-YA3

NF-YA09

NF-YA15

NF-YA05

Function^*

nuclear transcription factor Y subunit A-4-like

nuclear transcription factor Y subunit A-3

nuclear transcription factor Y subunit A-8

nuclear transcription factor Y subunit A-4

nuclear transcription factor Y subunit A-7-like

nuclear transcription factor Y subunit A-3-like

nuclear transcription factor Y subunit A-8-like

nuclear factor Y, subunit A8

nuclear factor Y, subunit A3

nuclear transcription factor Y subunit A-9

nuclear transcription factor Y subunit A-15

nuclear transcription factor Y subunit A-5

nuclear transcription factor Y subunit A-3

nuclear transcription factor Y subunit A-8

nuclear transcription factor Y subunit A-3

nuclear transcription factor Y subunit A-4

nuclear transcription factor Y subunit A-3

nuclear transcription factor Y subunit A-4

nuclear transcription factor Y subunit A-8

nuclear transcription factor Y subunit A-3

nuclear transcription factor Y subunit A-5

nuclear transcription factor Y subunit A-3

nuclear transcription factor Y subunit A-3-like

nuclear transcription factor Y subunit A-3

nuclear transcription factor Y subunit A-7

nuclear transcription factor Y subunit A-4

nuclear transcription factor Y subunit A-7

nuclear transcription factor Y subunit A-3

nuclear transcription factor Y subunit A-7

nuclear transcription factor Y subunit A-4

nuclear transcription factor Y subunit A-7

nuclear transcription factor Y subunit A-4-like

nuclear transcription factor Y subunit A-7-like

nuclear transcription factor Y subunit A-5

nuclear transcription factor Y subunit A-4

nuclear transcription factor Y subunit A-3

nuclear transcription factor Y subunit A-4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta01200	Carbon metabolism	3
nta01230	Biosynthesis of amino acids	3
nta03060	Protein export	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot04382	Cornified envelope formation	2
sot00564	Glycerophospholipid metabolism	2
sot00565	Ether lipid metabolism	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	3
gma00760	Nicotinate and nicotinamide metabolism	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	2
bra00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00280	Valine, leucine and isoleucine degradation	4
ghi00640	Propanoate metabolism	2
ghi00785	Lipoic acid metabolism	2
ghi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04070	Phosphatidylinositol signaling system	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	4
tae00511	Other glycan degradation	3
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae00511	Other glycan degradation	3
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00564	Glycerophospholipid metabolism	2
bdi04070	Phosphatidylinositol signaling system	2

Expression

Expression pattern

Entrez Gene ID^*

107789322

107772175

107766835

101246742

101259926

101247294

102595015

102578385

102605535

838335

843614

100793856

100803893

100500765

103852805

103842742

103831785

100249800

100249054

7490523

7484645

11433420

107902490

107906078

107929866

106402883

106354243

106406270

102611325

4331796

4333094

4343866

100282696

100280919

103644713

123052125

123128600

123187984

123403683

123425358

8081931

8080415

8079173

100832222

100846922

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	2	3	3	2	2	1	3	3	1	3	3	3	2	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107789322 (nta-r.1 coexpression data)

Top 50 enrichment test to 107789322 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**