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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107793038   MADS-box protein AGL42 
 nta-r.1   107780664   agamous-like MADS-box protein AGL19 
 nta-r.1   107828738   MADS-box protein SOC1 
 nta-r.1   107761745   agamous-like MADS-box protein AGL19 
 sly-u.5   FYFL   MADS-box protein SOC1-like 
 sly-u.5   101259089   MADS-box protein SOC1-like 
 sly-u.5   101250432   agamous-like MADS-box protein AGL19 
 sot-r.1   102601314   MADS-box protein SOC1-like 
 sot-r.1   107058273   MADS-box protein SOC1-like 
 sot-r.1   102592177   MADS-box protein SOC1-like 
 ath-u.5   AGL42   AGAMOUS-like 42 
 gma-u.5   100805260   agamous-like MADS-box protein AGL19-like 
 gma-u.5   100816440   MADS-box protein SOC1 
 bra-r.6   103839919   agamous-like MADS-box protein AGL14 
 bra-r.6   103874654   MADS-box protein AGL42-like 
 bra-r.6   103861349   agamous-like MADS-box protein AGL19 
 vvi-u.5   100268115   MADS-box protein AGL42 
 vvi-u.5   100252657   MADS-box transcription factor 15 
 vvi-u.5   100246102   agamous-like MADS-box protein AGL19 
 ppo-u.5   7488925   MADS-box protein SOC1 
 ppo-u.5   7479245   agamous-like MADS-box protein AGL19 
 mtr-u.5   11432102   MADS-box protein SOC1 
 mtr-u.5   25493640   agamous-like MADS-box protein AGL19 
 mtr-u.5   25500990   MADS-box protein SOC1 
 ghi-r.1   107912078   truncated transcription factor CAULIFLOWER A 
 ghi-r.1   107911933   MADS-box protein SOC1 
 ghi-r.1   107904628   MADS-box protein SOC1 
 cit-r.1   102577939   SOC1-like protein 1 
 cit-r.1   127901497   MADS-box protein SOC1 
 cit-r.1   102577938   SOC1-like protein 2 
 osa-u.5   4331445   MADS-box transcription factor 50-like 
 osa-u.5   4327247   MADS-box transcription factor 51-like 
 osa-u.5   107276241   MADS-box transcription factor 50-like 
 zma-u.5   100382583   uncharacterized LOC100382583 
 zma-u.5   542042   MADS1 
 zma-u.5   100279630   uncharacterized LOC100279630 
 tae-r.2   123063125   MADS-box transcription factor 51 
 hvu-r.1   123445266   MADS-box transcription factor 51-like 
 hvu-r.1   123449878   MADS-box transcription factor 50-like 
 sbi-r.1   8060808   MADS-box transcription factor 51 
 sbi-r.1   8077968   MADS-box transcription factor 50 
 sbi-r.1   8079807   MADS-box transcription factor 51 
 bdi-r.1   100826117   MADS-box transcription factor 51 
 bdi-r.1   100823405   MADS-box transcription factor 51-like 
 bdi-r.1   100823796   MADS-box transcription factor 56-like 
 cre-r.1   CHLRE_11g467577v5   uncharacterized protein 

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Top 50 coexpressed genes to 107793038 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107793038 (nta-r.1 coexpression data)

CoexMap"107793038"


ntaLOC107793038 | Entrez gene ID : 107793038      
Species nta sly sot ath gma bra vvi ppo mtr ghi cit osa zma tae hvu sbi bdi cre bna
Paralog 4 3 3 1 2 3 3 2 3 3 3 3 3 1 2 3 3 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (239 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4980 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (454 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1129 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2091 genes)  IEA  
Protein XP_075108097.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_075108097.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for XP_075108097.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107793038
nta-r.1
for
107780664
nta-r.1
for
107828738
nta-r.1
for
107761745
sly-u.5
for
FYFL
sly-u.5
for
101259089
sly-u.5
for
101250432
sot-r.1
for
102601314
sot-r.1
for
107058273
sot-r.1
for
102592177
ath-u.5
for
AGL42
gma-u.5
for
100805260
gma-u.5
for
100816440
bra-r.6
for
103839919
bra-r.6
for
103874654
bra-r.6
for
103861349
vvi-u.5
for
100268115
vvi-u.5
for
100252657
vvi-u.5
for
100246102
ppo-u.5
for
7488925
ppo-u.5
for
7479245
mtr-u.5
for
11432102
mtr-u.5
for
25493640
mtr-u.5
for
25500990
ghi-r.1
for
107912078
ghi-r.1
for
107911933
ghi-r.1
for
107904628
cit-r.1
for
102577939
cit-r.1
for
127901497
cit-r.1
for
102577938
osa-u.5
for
4331445
osa-u.5
for
4327247
osa-u.5
for
107276241
zma-u.5
for
100382583
zma-u.5
for
542042
zma-u.5
for
100279630
tae-r.2
for
123063125
hvu-r.1
for
123445266
hvu-r.1
for
123449878
sbi-r.1
for
8060808
sbi-r.1
for
8077968
sbi-r.1
for
8079807
bdi-r.1
for
100826117
bdi-r.1
for
100823405
bdi-r.1
for
100823796
cre-r.1
for
CHLRE_11g467577v5


Ortholog ID: 245
Species nta nta nta sly sly sly sot sot sot ath gma gma gma bra vvi vvi vvi ppo ppo ppo mtr ghi ghi ghi bna bna cit cit cit osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC107828738 LOC107776514 LOC107816198 FYFL LOC101244491 LOC544075 LOC102601314 LOC107058273 LOC102603784 AGL14 LOC100816440 LOC100807963 LOC100784678 SOC1 LOC100268115 LOC100246102 MADS8 LOC18094432 LOC7482155 LOC7494028 LOC25500990 LOC107963688 LOC107957281 LOC107908954 LOC106389254 LOC106440467 LOC102577939 LOC102577938 LOC102619676 LOC4327247 LOC107276190 LOC4349237 LOC100279630 LOC103649797 LOC541985 LOC123051047 LOC100125729 LOC123093767 LOC123445266 LOC123445264 LOC8060808 LOC8077968 LOC110431745 LOC100826117 LOC100824579 LOC100825614 CHLRE_11g467577v5
Function* MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box protein SOC1-like MADS-box protein AGL42-like MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box protein SOC1-like MADS-box protein SOC1-like AGAMOUS-like 14 MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box protein AGL42 agamous-like MADS-box protein AGL19 MADS-box protein agamous-like MADS-box protein AGL19 MADS-box protein AGL42 MADS-box protein SOC1 MADS-box protein SOC1 agamous-like MADS-box protein AGL19 MADS-box protein SOC1-like MADS-box protein SOC1 MADS-box protein AGL42 agamous-like MADS-box protein AGL19 SOC1-like protein 1 SOC1-like protein 2 truncated transcription factor CAULIFLOWER A-like MADS-box transcription factor 51-like MADS-box protein SOC1 MADS-box transcription factor 56-like uncharacterized LOC100279630 MADS-box transcription factor 51 MADS14 MADS-box transcription factor 56 MADS-box transcription factor 50 MADS-box transcription factor 50 MADS-box transcription factor 51-like MADS-box transcription factor 51-like MADS-box transcription factor 51 MADS-box transcription factor 50 MADS-box transcription factor 56-like MADS-box transcription factor 51 agamous-like MADS-box protein AGL14-like MADS-box protein SOC1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 3
nta00941 Flavonoid biosynthesis 3
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi04016 MAPK signaling pathway - plant 2
vvi00910 Nitrogen metabolism 2
vvi01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00260 Glycine, serine and threonine metabolism 2
hvu00350 Tyrosine metabolism 2
hvu00360 Phenylalanine metabolism 2
hvu00410 beta-Alanine metabolism 2
hvu00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 5
sbi04075 Plant hormone signal transduction 5
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107828738 107776514 107816198 101266695 101244491 544075 102601314 107058273 102603784 826795 100816440 100807963 100784678 103858179 100268115 100246102 100232995 18094432 7482155 7494028 25500990 107963688 107957281 107908954 106389254 106440467 102577939 102577938 102619676 4327247 107276190 4349237 100279630 103649797 541985 123051047 100125729 123093767 123445266 123445264 8060808 8077968 110431745 100826117 100824579 100825614 5726939
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