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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107911933   MADS-box protein SOC1 
 ath-u.5   AGL42   AGAMOUS-like 42 
 gma-u.5   100805260   agamous-like MADS-box protein AGL19-like 
 gma-u.5   100816440   MADS-box protein SOC1 
 vvi-u.5   100268115   MADS-box protein AGL42 
 vvi-u.5   100252657   MADS-box transcription factor 15 
 vvi-u.5   100246102   agamous-like MADS-box protein AGL19 
 ppo-u.5   7463134   truncated transcription factor CAULIFLOWER D 
 ppo-u.5   7488925   MADS-box protein SOC1 
 mtr-u.5   11432102   MADS-box protein SOC1 
 mtr-u.5   25493640   agamous-like MADS-box protein AGL19 
 mtr-u.5   25500990   MADS-box protein SOC1 
 sly-u.5   FYFL   MADS-box protein SOC1-like 
 sly-u.5   101259089   MADS-box protein SOC1-like 
 sly-u.5   101250432   agamous-like MADS-box protein AGL19 
 osa-u.5   4331445   MADS-box transcription factor 50-like 
 osa-u.5   4327247   MADS-box transcription factor 51-like 
 osa-u.5   107276241   MADS-box transcription factor 50-like 
 zma-u.5   100382583   uncharacterized LOC100382583 
 zma-u.5   542042   MADS1 
 zma-u.5   100279630   uncharacterized LOC100279630 

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Top 50 coexpressed genes to 107911933 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107911933 (ghi-r.1 coexpression data)

CoexMap"107911933"


ghiLOC107911933 | Entrez gene ID : 107911933    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 3 2 3 3 3 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (349 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (605 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (729 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
Protein XP_016695422.1 [sequence] [blastp]
XP_016695423.1 [sequence] [blastp]
XP_016695424.1 [sequence] [blastp]
XP_016695426.1 [sequence] [blastp]
XP_016695427.1 [sequence] [blastp]
XP_040961750.1 [sequence] [blastp]
XP_040961751.1 [sequence] [blastp]
XP_040961752.1 [sequence] [blastp]
XP_040961753.1 [sequence] [blastp]
XP_040961754.1 [sequence] [blastp]
XP_040961755.1 [sequence] [blastp]
XP_040961756.1 [sequence] [blastp]
XP_040961757.1 [sequence] [blastp]
XP_040961758.1 [sequence] [blastp]
XP_040961759.1 [sequence] [blastp]
XP_040961760.1 [sequence] [blastp]
XP_040961761.1 [sequence] [blastp]
XP_040961762.1 [sequence] [blastp]
XP_040961763.1 [sequence] [blastp]
XP_040961764.1 [sequence] [blastp]
XP_040961765.1 [sequence] [blastp]
XP_040961766.1 [sequence] [blastp]
XP_040961767.1 [sequence] [blastp]
XP_040961768.1 [sequence] [blastp]
XP_040961769.1 [sequence] [blastp]
XP_040961770.1 [sequence] [blastp]
XP_040961771.1 [sequence] [blastp]
XP_040961773.1 [sequence] [blastp]
XP_040961774.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_016695422.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_016695423.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_016695424.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_016695426.1)
nucl 6,  chlo 2,  plas 1,  golg 1,  golg_plas 1  (predict for XP_016695427.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961750.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961751.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961752.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961753.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961754.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961755.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961756.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961757.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961758.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961759.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_040961760.1)
nucl 6,  chlo 2,  plas 1,  golg 1,  golg_plas 1  (predict for XP_040961761.1)
nucl 6,  chlo 2,  plas 1,  golg 1,  golg_plas 1  (predict for XP_040961762.1)
nucl 6,  chlo 2,  plas 1,  golg 1,  golg_plas 1  (predict for XP_040961763.1)
nucl 6,  chlo 2,  plas 1,  golg 1,  golg_plas 1  (predict for XP_040961764.1)
nucl 6,  chlo 2,  plas 1,  golg 1,  golg_plas 1  (predict for XP_040961765.1)
nucl 6,  chlo 2,  plas 1  (predict for XP_040961766.1)
nucl 6,  chlo 2,  plas 1  (predict for XP_040961767.1)
nucl 6,  chlo 2,  plas 1  (predict for XP_040961768.1)
nucl 6,  chlo 2,  plas 1  (predict for XP_040961769.1)
nucl 6,  chlo 2,  golg 1  (predict for XP_040961770.1)
nucl 6,  chlo 1,  golg 1  (predict for XP_040961771.1)
nucl 6,  chlo 1,  golg 1  (predict for XP_040961773.1)
nucl 6,  chlo 1,  golg 1  (predict for XP_040961774.1)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for XP_016695422.1)
other 6,  mito 4  (predict for XP_016695423.1)
other 6,  mito 4  (predict for XP_016695424.1)
other 6,  mito 3  (predict for XP_016695426.1)
other 6,  mito 4  (predict for XP_016695427.1)
other 6,  mito 4  (predict for XP_040961750.1)
other 6,  mito 4  (predict for XP_040961751.1)
other 6,  mito 3  (predict for XP_040961752.1)
other 6,  mito 3  (predict for XP_040961753.1)
other 6,  mito 3  (predict for XP_040961754.1)
other 6,  mito 3  (predict for XP_040961755.1)
other 6,  mito 3  (predict for XP_040961756.1)
other 6,  mito 3  (predict for XP_040961757.1)
other 6,  mito 3  (predict for XP_040961758.1)
other 6,  mito 3  (predict for XP_040961759.1)
other 6,  mito 3  (predict for XP_040961760.1)
other 6,  mito 3  (predict for XP_040961761.1)
other 6,  mito 3  (predict for XP_040961762.1)
other 6,  mito 3  (predict for XP_040961763.1)
other 6,  mito 3  (predict for XP_040961764.1)
other 6,  mito 3  (predict for XP_040961765.1)
other 6,  mito 3  (predict for XP_040961766.1)
other 6,  mito 3  (predict for XP_040961767.1)
other 6,  mito 3  (predict for XP_040961768.1)
other 6,  mito 3  (predict for XP_040961769.1)
other 6,  mito 4  (predict for XP_040961770.1)
other 6,  mito 3  (predict for XP_040961771.1)
other 6,  mito 3  (predict for XP_040961773.1)
other 6,  mito 3  (predict for XP_040961774.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107911933
ath-u.5
for
AGL42
gma-u.5
for
100805260
gma-u.5
for
100816440
vvi-u.5
for
100268115
vvi-u.5
for
100252657
vvi-u.5
for
100246102
ppo-u.5
for
7463134
ppo-u.5
for
7488925
mtr-u.5
for
11432102
mtr-u.5
for
25493640
mtr-u.5
for
25500990
sly-u.5
for
FYFL
sly-u.5
for
101259089
sly-u.5
for
101250432
osa-u.5
for
4331445
osa-u.5
for
4327247
osa-u.5
for
107276241
zma-u.5
for
100382583
zma-u.5
for
542042
zma-u.5
for
100279630


Ortholog ID: 245
Species ghi ghi ath bra bna cit cit gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu sbi sbi bdi bdi cre
Symbol LOC107957281 LOC107963688 AGL14 SOC1 LOC106389254 LOC102577938 LOC102577939 LOC100807963 LOC100784678 MADS8 LOC100268115 LOC7482155 LOC18094432 LOC25500990 FYFL LOC544075 LOC102603784 LOC107058273 LOC107828738 LOC107776514 LOC4349237 LOC4327247 LOC103649797 LOC541985 LOC123093767 LOC100125729 LOC123445264 LOC110431745 LOC8060808 LOC100824579 LOC100826117 CHLRE_11g467577v5
Function* MADS-box protein SOC1-like agamous-like MADS-box protein AGL19 AGAMOUS-like 14 MADS-box protein SOC1-like MADS-box protein AGL42 SOC1-like protein 2 SOC1-like protein 1 MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein MADS-box protein AGL42 MADS-box protein AGL42 agamous-like MADS-box protein AGL19 MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box protein SOC1-like MADS-box protein SOC1 MADS-box protein SOC1 MADS-box transcription factor 56-like MADS-box transcription factor 51-like MADS-box transcription factor 51 MADS14 MADS-box transcription factor 50 MADS-box transcription factor 50 MADS-box transcription factor 51-like MADS-box transcription factor 56-like MADS-box transcription factor 51 agamous-like MADS-box protein AGL14-like MADS-box transcription factor 51 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 3
nta00941 Flavonoid biosynthesis 3
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00260 Glycine, serine and threonine metabolism 2
hvu00350 Tyrosine metabolism 2
hvu00360 Phenylalanine metabolism 2
hvu00410 beta-Alanine metabolism 2
hvu00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107957281 107963688 826795 103858179 106389254 102577938 102577939 100807963 100784678 100232995 100268115 7482155 18094432 25500990 101266695 544075 102603784 107058273 107828738 107776514 4349237 4327247 103649797 541985 123093767 100125729 123445264 110431745 8060808 100824579 100826117 5726939
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