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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107799383   ERAD-associated E3 ubiquitin-protein ligase component HRD3B 
 nta-r.1   107761054   ERAD-associated E3 ubiquitin-protein ligase component HRD3B 
 sly-u.5   101243872   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 sot-r.1   102594829   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 ath-u.5   EBS5   HCP-like superfamily protein 
 ath-u.5   AT1G73570   HCP-like superfamily protein 
 gma-u.5   732556   SEL-1 
 gma-u.5   100787823   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 bra-r.6   103872588   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 bra-r.6   103853398   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 vvi-u.5   100256050   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 ppo-u.5   7493488   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 ppo-u.5   7474823   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 mtr-u.5   11415768   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 ghi-r.1   107923923   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 ghi-r.1   107904686   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 bna-r.1   106427147   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 bna-r.1   106446578   ERAD-associated E3 ubiquitin-protein ligase component HRD3A-like 
 bna-r.1   106346896   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 cit-r.1   102626072   ERAD-associated E3 ubiquitin-protein ligase component HRD3A 
 osa-u.5   4332310   ERAD-associated E3 ubiquitin-protein ligase component HRD3-like 
 zma-u.5   103633963   ERAD-associated E3 ubiquitin-protein ligase component HRD3 
 zma-u.5   103639339   ERAD-associated E3 ubiquitin-protein ligase component HRD3 
 tae-r.2   123092706   ERAD-associated E3 ubiquitin-protein ligase component HRD3 
 tae-r.2   123085339   ERAD-associated E3 ubiquitin-protein ligase component HRD3 
 tae-r.2   123098006   ERAD-associated E3 ubiquitin-protein ligase component HRD3 
 hvu-r.1   123449107   ERAD-associated E3 ubiquitin-protein ligase component HRD3 
 sbi-r.1   8054310   ERAD-associated E3 ubiquitin-protein ligase component HRD3 
 bdi-r.1   100839974   ERAD-associated E3 ubiquitin-protein ligase component HRD3 
 cre-r.1   CHLRE_03g197400v5   uncharacterized protein 

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Top 50 coexpressed genes to 107799383 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107799383 (nta-r.1 coexpression data)

CoexMap"107799383"


ntaLOC107799383 | Entrez gene ID : 107799383      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 2 2 1 2 1 2 3 1 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta04141 [list] [network] Protein processing in endoplasmic reticulum (495 genes)
GO BP
GO:0036503 [list] [network] ERAD pathway  (81 genes)  IEA  
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (7685 genes)  IEA  
Protein XP_016477975.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  mito 2,  chlo 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_016477975.2)
Subcellular
localization
TargetP
scret 8,  mito 7  (predict for XP_016477975.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107799383
nta-r.1
for
107761054
sly-u.5
for
101243872
sot-r.1
for
102594829
ath-u.5
for
EBS5
ath-u.5
for
AT1G73570
gma-u.5
for
732556
gma-u.5
for
100787823
bra-r.6
for
103872588
bra-r.6
for
103853398
vvi-u.5
for
100256050
ppo-u.5
for
7493488
ppo-u.5
for
7474823
mtr-u.5
for
11415768
ghi-r.1
for
107923923
ghi-r.1
for
107904686
bna-r.1
for
106427147
bna-r.1
for
106446578
bna-r.1
for
106346896
cit-r.1
for
102626072
osa-u.5
for
4332310
zma-u.5
for
103633963
zma-u.5
for
103639339
tae-r.2
for
123092706
tae-r.2
for
123085339
tae-r.2
for
123098006
hvu-r.1
for
123449107
sbi-r.1
for
8054310
bdi-r.1
for
100839974
cre-r.1
for
CHLRE_03g197400v5


Ortholog ID: 7805
Species nta nta sly sot ath ath gma gma bra bra vvi ppo ppo mtr ghi ghi bna bna bna cit osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107799383 LOC107761054 LOC101243872 LOC102594829 EBS5 AT1G73570 LOC732556 LOC100787823 LOC103872588 LOC103853398 LOC100256050 LOC7493488 LOC7474823 LOC11415768 LOC107923923 LOC107904686 LOC106427147 LOC106446578 LOC106346896 LOC102626072 LOC4332310 LOC103633963 LOC103639339 LOC123092706 LOC123085339 LOC123098006 LOC123449107 LOC8054310 LOC100839974 CHLRE_03g197400v5
Function* ERAD-associated E3 ubiquitin-protein ligase component HRD3B ERAD-associated E3 ubiquitin-protein ligase component HRD3B ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A HCP-like superfamily protein HCP-like superfamily protein SEL-1 ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A-like ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3A ERAD-associated E3 ubiquitin-protein ligase component HRD3-like ERAD-associated E3 ubiquitin-protein ligase component HRD3 ERAD-associated E3 ubiquitin-protein ligase component HRD3 ERAD-associated E3 ubiquitin-protein ligase component HRD3 ERAD-associated E3 ubiquitin-protein ligase component HRD3 ERAD-associated E3 ubiquitin-protein ligase component HRD3 ERAD-associated E3 ubiquitin-protein ligase component HRD3 ERAD-associated E3 ubiquitin-protein ligase component HRD3 ERAD-associated E3 ubiquitin-protein ligase component HRD3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 5
nta00510 N-Glycan biosynthesis 4
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 5
nta00510 N-Glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 10
sly03015 mRNA surveillance pathway 2
sly03250 Viral life cycle - HIV-1 2
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 13
sot04145 Phagosome 3
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 8
ath04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 18
gma03060 Protein export 4
gma04145 Phagosome 3
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 11
gma04145 Phagosome 2
gma04120 Ubiquitin mediated proteolysis 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 11
bra03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 8
vvi00510 N-Glycan biosynthesis 3
vvi04144 Endocytosis 2
vvi05100 Bacterial invasion of epithelial cells 2
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 6
ppo00510 N-Glycan biosynthesis 3
ppo00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 4
ppo00510 N-Glycan biosynthesis 3
ppo00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 12
mtr04145 Phagosome 3
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 4
cit04141 Protein processing in endoplasmic reticulum 4
cit03250 Viral life cycle - HIV-1 2
cit03272 Virion - Hepatitis viruses 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 12
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
zma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 19
tae04145 Phagosome 6
tae04120 Ubiquitin mediated proteolysis 2
tae04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 13
tae04145 Phagosome 4
tae04120 Ubiquitin mediated proteolysis 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 13
tae04145 Phagosome 4
tae04120 Ubiquitin mediated proteolysis 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107799383 107761054 101243872 102594829 838406 843691 732556 100787823 103872588 103853398 100256050 7493488 7474823 11415768 107923923 107904686 106427147 106446578 106346896 102626072 4332310 103633963 103639339 123092706 123085339 123098006 123449107 8054310 100839974 5718780
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