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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107804602   threonine dehydratase biosynthetic, chloroplastic-like 
 sly-u.5   TD2   threonine dehydratase biosynthetic, chloroplastic 
 sly-u.5   101244823   threonine dehydratase 1 biosynthetic, chloroplastic-like 
 sly-u.5   100037737   chloroplast threonine deaminase 1 precursor 
 ath-u.5   OMR1   L-O-methylthreonine resistant 1 
 gma-u.5   100802802   threonine dehydratase biosynthetic, chloroplastic 
 gma-u.5   100777200   threonine dehydratase biosynthetic, chloroplastic 
 vvi-u.5   100248644   threonine dehydratase 1 biosynthetic, chloroplastic 
 ppo-u.5   18100094   threonine dehydratase biosynthetic, chloroplastic 
 mtr-u.5   11433265   threonine dehydratase biosynthetic, chloroplastic 
 osa-u.5   4333898   threonine dehydratase 1 biosynthetic, chloroplastic 
 zma-u.5   103643901   threonine dehydratase 1 biosynthetic, chloroplastic 
 zma-u.5   103625947   threonine dehydratase 1 biosynthetic, chloroplastic 

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Top 50 coexpressed genes to 107804602 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107804602 (nta-r.1 coexpression data)

CoexMap"107804602"


ntaLOC107804602 | Entrez gene ID : 107804602      
Species nta sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot cre tae
Paralog 1 3 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta00260 [list] [network] Glycine, serine and threonine metabolism (146 genes)
nta00290 [list] [network] Valine, leucine and isoleucine biosynthesis (45 genes)
nta01200 [list] [network] Carbon metabolism (563 genes)
nta01230 [list] [network] Biosynthesis of amino acids (462 genes)
GO BP
GO:0006565 [list] [network] L-serine catabolic process  (6 genes)  IEA  
GO:0006567 [list] [network] L-threonine catabolic process  (9 genes)  IEA  
GO:0009097 [list] [network] isoleucine biosynthetic process  (19 genes)  IEA  
GO CC
GO MF
GO:0004794 [list] [network] threonine deaminase activity  (6 genes)  IEA  
GO:0003941 [list] [network] L-serine ammonia-lyase activity  (8 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (205 genes)  IEA  
Protein NP_001312686.1 [sequence] [blastp]
XP_016484011.2 [sequence] [blastp]
XP_075103115.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 4,  chlo 3,  plas 1,  chlo_mito 1,  cyto 1,  cyto_nucl 1  (predict for NP_001312686.1)
chlo 9,  plas 1,  vacu 1  (predict for XP_016484011.2)
chlo 9,  plas 1,  vacu 1  (predict for XP_075103115.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001312686.1)
chlo 7  (predict for XP_016484011.2)
chlo 7  (predict for XP_075103115.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107804602
sly-u.5
for
TD2
sly-u.5
for
101244823
sly-u.5
for
100037737
ath-u.5
for
OMR1
gma-u.5
for
100802802
gma-u.5
for
100777200
vvi-u.5
for
100248644
ppo-u.5
for
18100094
mtr-u.5
for
11433265
osa-u.5
for
4333898
zma-u.5
for
103643901
zma-u.5
for
103625947


Ortholog ID: 4716
Species nta nta sly sly sot sot ath gma gma bra bra vvi ppo mtr ghi ghi bna bna cit osa zma zma tae tae hvu sbi bdi bdi cre
Symbol LOC107789605 LOC107815334 LOC100037737 LOC101244823 LOC102583664 TD OMR1 LOC100777200 LOC100802802 LOC103870493 LOC103859270 LOC100248644 LOC18100094 LOC11433265 LOC107907693 LOC107899512 LOC106439173 LOC106410269 LOC102621403 LOC4333898 LOC103625947 LOC103643901 LOC123096600 LOC123090864 LOC123447497 LOC8062907 LOC100823181 LOC100838038 CHLRE_02g073200v5
Function* threonine dehydratase 1 biosynthetic, chloroplastic-like threonine dehydratase 1 biosynthetic, chloroplastic-like chloroplast threonine deaminase 1 precursor threonine dehydratase 1 biosynthetic, chloroplastic-like threonine dehydratase biosynthetic, chloroplastic-like threonine dehydratase biosynthetic-like L-O-methylthreonine resistant 1 threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 5
nta00290 Valine, leucine and isoleucine biosynthesis 5
nta01200 Carbon metabolism 5
nta01230 Biosynthesis of amino acids 5
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 5
nta00290 Valine, leucine and isoleucine biosynthesis 5
nta01200 Carbon metabolism 5
nta01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 5
sly01230 Biosynthesis of amino acids 4
sly00290 Valine, leucine and isoleucine biosynthesis 3
sly03040 Spliceosome 2
sly00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00290 Valine, leucine and isoleucine biosynthesis 6
sot01230 Biosynthesis of amino acids 6
sot04141 Protein processing in endoplasmic reticulum 5
sot00770 Pantothenate and CoA biosynthesis 4
sot01210 2-Oxocarboxylic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 3
sot00010 Glycolysis / Gluconeogenesis 2
sot00480 Glutathione metabolism 2
sot00220 Arginine biosynthesis 2
sot00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 15
ath01210 2-Oxocarboxylic acid metabolism 6
ath00290 Valine, leucine and isoleucine biosynthesis 5
ath00770 Pantothenate and CoA biosynthesis 3
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00920 Sulfur metabolism 3
gma01320 Sulfur cycle 3
gma00290 Valine, leucine and isoleucine biosynthesis 3
gma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 2
bra00290 Valine, leucine and isoleucine biosynthesis 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 5
vvi03010 Ribosome 4
vvi01210 2-Oxocarboxylic acid metabolism 3
vvi01200 Carbon metabolism 2
vvi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00290 Valine, leucine and isoleucine biosynthesis 5
ppo01230 Biosynthesis of amino acids 5
ppo00770 Pantothenate and CoA biosynthesis 4
ppo01210 2-Oxocarboxylic acid metabolism 4
ppo01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03050 Proteasome 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 9
ghi00020 Citrate cycle (TCA cycle) 6
ghi01230 Biosynthesis of amino acids 5
ghi00270 Cysteine and methionine metabolism 4
ghi00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi01230 Biosynthesis of amino acids 5
ghi00620 Pyruvate metabolism 4
ghi00230 Purine metabolism 4
ghi00250 Alanine, aspartate and glutamate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00290 Valine, leucine and isoleucine biosynthesis 6
bna01200 Carbon metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00290 Valine, leucine and isoleucine biosynthesis 6
bna01200 Carbon metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04146 Peroxisome 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 5
osa00230 Purine metabolism 3
osa00290 Valine, leucine and isoleucine biosynthesis 3
osa01210 2-Oxocarboxylic acid metabolism 3
osa00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 4
zma00290 Valine, leucine and isoleucine biosynthesis 3
zma01230 Biosynthesis of amino acids 3
zma00620 Pyruvate metabolism 2
zma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00290 Valine, leucine and isoleucine biosynthesis 3
zma01230 Biosynthesis of amino acids 3
zma00770 Pantothenate and CoA biosynthesis 2
zma00260 Glycine, serine and threonine metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00290 Valine, leucine and isoleucine biosynthesis 6
tae01230 Biosynthesis of amino acids 6
tae01200 Carbon metabolism 5
tae00260 Glycine, serine and threonine metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00290 Valine, leucine and isoleucine biosynthesis 6
tae01230 Biosynthesis of amino acids 6
tae00260 Glycine, serine and threonine metabolism 3
tae01200 Carbon metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 4
hvu01240 Biosynthesis of cofactors 3
hvu00020 Citrate cycle (TCA cycle) 3
hvu00270 Cysteine and methionine metabolism 2
hvu00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 9
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sbi00541 Biosynthesis of various nucleotide sugars 3
sbi01250 Biosynthesis of nucleotide sugars 3
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00260 Glycine, serine and threonine metabolism 3
bdi00290 Valine, leucine and isoleucine biosynthesis 3
bdi01200 Carbon metabolism 3
bdi01230 Biosynthesis of amino acids 3
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 10
bdi01200 Carbon metabolism 7
bdi00260 Glycine, serine and threonine metabolism 5
bdi00710 Carbon fixation by Calvin cycle 4
bdi00290 Valine, leucine and isoleucine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 3
cre01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107789605 107815334 100037737 101244823 102583664 102582387 820166 100777200 100802802 103870493 103859270 100248644 18100094 11433265 107907693 107899512 106439173 106410269 102621403 4333898 103625947 103643901 123096600 123090864 123447497 8062907 100823181 100838038 5727158
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