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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107890152   threonine dehydratase biosynthetic, chloroplastic 
 ghi-r.1   107899512   threonine dehydratase biosynthetic, chloroplastic 
 ghi-r.1   107907693   threonine dehydratase biosynthetic, chloroplastic 
 ath-u.5   OMR1   L-O-methylthreonine resistant 1 
 bra-r.6   103847839   threonine dehydratase biosynthetic, chloroplastic 
 bra-r.6   103859270   threonine dehydratase biosynthetic, chloroplastic 
 bra-r.6   103870493   threonine dehydratase biosynthetic, chloroplastic 
 bna-r.1   106439173   threonine dehydratase biosynthetic, chloroplastic 
 bna-r.1   106427957   threonine dehydratase biosynthetic, chloroplastic-like 
 bna-r.1   125580379   threonine dehydratase biosynthetic, chloroplastic-like 
 cit-r.1   102621403   threonine dehydratase biosynthetic, chloroplastic 
 gma-u.5   100802802   threonine dehydratase biosynthetic, chloroplastic 
 gma-u.5   100777200   threonine dehydratase biosynthetic, chloroplastic 
 vvi-u.5   100248644   threonine dehydratase 1 biosynthetic, chloroplastic 
 ppo-u.5   18100094   threonine dehydratase biosynthetic, chloroplastic 
 mtr-u.5   11433265   threonine dehydratase biosynthetic, chloroplastic 
 sly-u.5   TD2   threonine dehydratase biosynthetic, chloroplastic 
 sly-u.5   101244823   threonine dehydratase 1 biosynthetic, chloroplastic-like 
 sly-u.5   100037737   chloroplast threonine deaminase 1 precursor 
 sot-r.1   TD   threonine dehydratase biosynthetic-like 
 sot-r.1   102583664   threonine dehydratase biosynthetic, chloroplastic-like 
 sot-r.1   102592163   threonine dehydratase biosynthetic, chloroplastic-like 
 nta-r.1   107818180   threonine dehydratase 1 biosynthetic, chloroplastic-like 
 nta-r.1   107815334   threonine dehydratase 1 biosynthetic, chloroplastic-like 
 nta-r.1   107804602   threonine dehydratase biosynthetic, chloroplastic-like 
 osa-u.5   4333898   threonine dehydratase 1 biosynthetic, chloroplastic 
 zma-u.5   103643901   threonine dehydratase 1 biosynthetic, chloroplastic 
 zma-u.5   103625947   threonine dehydratase 1 biosynthetic, chloroplastic 
 tae-r.2   123090864   threonine dehydratase 1 biosynthetic, chloroplastic 
 tae-r.2   123087098   threonine dehydratase 1 biosynthetic, chloroplastic 
 tae-r.2   123096600   threonine dehydratase 1 biosynthetic, chloroplastic 
 hvu-r.1   123447497   threonine dehydratase 1 biosynthetic, chloroplastic 
 sbi-r.1   8062907   threonine dehydratase biosynthetic, chloroplastic 
 bdi-r.1   100838038   threonine dehydratase biosynthetic, chloroplastic 
 bdi-r.1   100823181   threonine dehydratase biosynthetic, chloroplastic 
 cre-r.1   CHLRE_02g073200v5   uncharacterized protein 

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Top 50 coexpressed genes to 107890152 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107890152 (ghi-r.1 coexpression data)

CoexMap"107890152"


ghiLOC107890152 | Entrez gene ID : 107890152    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 3 3 1 2 1 1 1 3 3 3 1 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00260 [list] [network] Glycine, serine and threonine metabolism (150 genes)
ghi00290 [list] [network] Valine, leucine and isoleucine biosynthesis (50 genes)
ghi01200 [list] [network] Carbon metabolism (681 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0006567 [list] [network] L-threonine catabolic process  (10 genes)  IEA  
GO:0009097 [list] [network] isoleucine biosynthetic process  (23 genes)  IEA  
GO:0006565 [list] [network] L-serine catabolic process  (27 genes)  IEA  
GO CC
GO MF
GO:0004794 [list] [network] threonine deaminase activity  (4 genes)  IEA  
GO:0003941 [list] [network] L-serine ammonia-lyase activity  (6 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (218 genes)  IEA  
Protein XP_040932635.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  E.R. 1,  mito 1,  vacu 1,  E.R._plas 1,  cyto_E.R. 1  (predict for XP_040932635.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_040932635.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107890152
ghi-r.1
for
107899512
ghi-r.1
for
107907693
ath-u.5
for
OMR1
bra-r.6
for
103847839
bra-r.6
for
103859270
bra-r.6
for
103870493
bna-r.1
for
106439173
bna-r.1
for
106427957
bna-r.1
for
125580379
cit-r.1
for
102621403
gma-u.5
for
100802802
gma-u.5
for
100777200
vvi-u.5
for
100248644
ppo-u.5
for
18100094
mtr-u.5
for
11433265
sly-u.5
for
TD2
sly-u.5
for
101244823
sly-u.5
for
100037737
sot-r.1
for
TD
sot-r.1
for
102583664
sot-r.1
for
102592163
nta-r.1
for
107818180
nta-r.1
for
107815334
nta-r.1
for
107804602
osa-u.5
for
4333898
zma-u.5
for
103643901
zma-u.5
for
103625947
tae-r.2
for
123090864
tae-r.2
for
123087098
tae-r.2
for
123096600
hvu-r.1
for
123447497
sbi-r.1
for
8062907
bdi-r.1
for
100838038
bdi-r.1
for
100823181
cre-r.1
for
CHLRE_02g073200v5


Ortholog ID: 4716
Species ghi ghi ghi ath bra bra bra bna bna bna cit gma gma vvi ppo mtr sly sly sly sot sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi bdi cre
Symbol LOC107890152 LOC107899512 LOC107907693 OMR1 LOC103847839 LOC103859270 LOC103870493 LOC106439173 LOC106427957 LOC106410269 LOC102621403 LOC100802802 LOC100777200 LOC100248644 LOC18100094 LOC11433265 TD2 LOC101244823 LOC100037737 TD LOC102583664 LOC102592163 LOC107815334 LOC107804602 LOC107789605 LOC4333898 LOC103643901 LOC103625947 LOC123090864 LOC123087098 LOC123096600 LOC123447497 LOC8062907 LOC100838038 LOC100823181 CHLRE_02g073200v5
Function* threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic L-O-methylthreonine resistant 1 threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic-like threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic-like chloroplast threonine deaminase 1 precursor threonine dehydratase biosynthetic-like threonine dehydratase biosynthetic, chloroplastic-like threonine dehydratase biosynthetic, chloroplastic-like threonine dehydratase 1 biosynthetic, chloroplastic-like threonine dehydratase biosynthetic, chloroplastic-like threonine dehydratase 1 biosynthetic, chloroplastic-like threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase 1 biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic threonine dehydratase biosynthetic, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 9
ghi00020 Citrate cycle (TCA cycle) 6
ghi01230 Biosynthesis of amino acids 5
ghi00270 Cysteine and methionine metabolism 4
ghi00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi01230 Biosynthesis of amino acids 5
ghi00620 Pyruvate metabolism 4
ghi00230 Purine metabolism 4
ghi00250 Alanine, aspartate and glutamate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 9
ghi00020 Citrate cycle (TCA cycle) 6
ghi01230 Biosynthesis of amino acids 5
ghi00270 Cysteine and methionine metabolism 4
ghi00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 15
ath01210 2-Oxocarboxylic acid metabolism 6
ath00290 Valine, leucine and isoleucine biosynthesis 5
ath00770 Pantothenate and CoA biosynthesis 3
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 4
bra01230 Biosynthesis of amino acids 3
bra01240 Biosynthesis of cofactors 3
bra00730 Thiamine metabolism 3
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 2
bra00290 Valine, leucine and isoleucine biosynthesis 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00290 Valine, leucine and isoleucine biosynthesis 6
bna01200 Carbon metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00290 Valine, leucine and isoleucine biosynthesis 6
bna01200 Carbon metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00290 Valine, leucine and isoleucine biosynthesis 6
bna01200 Carbon metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04146 Peroxisome 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00920 Sulfur metabolism 3
gma01320 Sulfur cycle 3
gma00290 Valine, leucine and isoleucine biosynthesis 3
gma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 5
vvi03010 Ribosome 4
vvi01210 2-Oxocarboxylic acid metabolism 3
vvi01200 Carbon metabolism 2
vvi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00290 Valine, leucine and isoleucine biosynthesis 5
ppo01230 Biosynthesis of amino acids 5
ppo00770 Pantothenate and CoA biosynthesis 4
ppo01210 2-Oxocarboxylic acid metabolism 4
ppo01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03050 Proteasome 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 2
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 5
sly01230 Biosynthesis of amino acids 4
sly00290 Valine, leucine and isoleucine biosynthesis 3
sly03040 Spliceosome 2
sly00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 3
sot00010 Glycolysis / Gluconeogenesis 2
sot00480 Glutathione metabolism 2
sot00220 Arginine biosynthesis 2
sot00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00290 Valine, leucine and isoleucine biosynthesis 6
sot01230 Biosynthesis of amino acids 6
sot04141 Protein processing in endoplasmic reticulum 5
sot00770 Pantothenate and CoA biosynthesis 4
sot01210 2-Oxocarboxylic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00290 Valine, leucine and isoleucine biosynthesis 5
sot01230 Biosynthesis of amino acids 5
sot00770 Pantothenate and CoA biosynthesis 3
sot01210 2-Oxocarboxylic acid metabolism 3
sot00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 5
nta00290 Valine, leucine and isoleucine biosynthesis 5
nta01200 Carbon metabolism 5
nta01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 5
nta00290 Valine, leucine and isoleucine biosynthesis 5
nta01200 Carbon metabolism 5
nta01230 Biosynthesis of amino acids 5
nta00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 5
nta00290 Valine, leucine and isoleucine biosynthesis 5
nta01200 Carbon metabolism 5
nta01230 Biosynthesis of amino acids 5
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 5
osa00230 Purine metabolism 3
osa00290 Valine, leucine and isoleucine biosynthesis 3
osa01210 2-Oxocarboxylic acid metabolism 3
osa00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00290 Valine, leucine and isoleucine biosynthesis 3
zma01230 Biosynthesis of amino acids 3
zma00770 Pantothenate and CoA biosynthesis 2
zma00260 Glycine, serine and threonine metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 4
zma00290 Valine, leucine and isoleucine biosynthesis 3
zma01230 Biosynthesis of amino acids 3
zma00620 Pyruvate metabolism 2
zma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00290 Valine, leucine and isoleucine biosynthesis 6
tae01230 Biosynthesis of amino acids 6
tae00260 Glycine, serine and threonine metabolism 3
tae01200 Carbon metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 10
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
tae00290 Valine, leucine and isoleucine biosynthesis 5
tae00592 alpha-Linolenic acid metabolism 3
tae00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00290 Valine, leucine and isoleucine biosynthesis 6
tae01230 Biosynthesis of amino acids 6
tae01200 Carbon metabolism 5
tae00260 Glycine, serine and threonine metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 4
hvu01240 Biosynthesis of cofactors 3
hvu00020 Citrate cycle (TCA cycle) 3
hvu00270 Cysteine and methionine metabolism 2
hvu00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 9
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sbi00541 Biosynthesis of various nucleotide sugars 3
sbi01250 Biosynthesis of nucleotide sugars 3
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 10
bdi01200 Carbon metabolism 7
bdi00260 Glycine, serine and threonine metabolism 5
bdi00710 Carbon fixation by Calvin cycle 4
bdi00290 Valine, leucine and isoleucine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00260 Glycine, serine and threonine metabolism 3
bdi00290 Valine, leucine and isoleucine biosynthesis 3
bdi01200 Carbon metabolism 3
bdi01230 Biosynthesis of amino acids 3
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 3
cre01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107890152 107899512 107907693 820166 103847839 103859270 103870493 106439173 106427957 106410269 102621403 100802802 100777200 100248644 18100094 11433265 543983 101244823 100037737 102582387 102583664 102592163 107815334 107804602 107789605 4333898 103643901 103625947 123090864 123087098 123096600 123447497 8062907 100838038 100823181 5727158
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