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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107809274   splicing factor 3B subunit 6-like protein 
 nta-r.1   107816076   splicing factor 3B subunit 6-like protein 
 sly-u.5   101267636   RNA recognition motif (RRM) domain-containg protein 
 sot-r.1   102581420   splicing factor 3B subunit 6-like protein 
 ath-u.5   AT5G12190   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100802877   splicing factor 3B subunit 6-like protein 
 gma-u.5   100783741   splicing factor 3B subunit 6-like protein 
 bra-r.6   103855957   splicing factor 3B subunit 6-like protein 
 bra-r.6   103846660   splicing factor 3B subunit 6-like protein 
 vvi-u.5   100258249   splicing factor 3B subunit 6-like protein 
 ppo-u.5   7463876   splicing factor 3B subunit 6-like protein 
 ppo-u.5   7454882   splicing factor 3B subunit 6-like protein 
 mtr-u.5   11431415   splicing factor 3B subunit 6-like protein 
 ghi-r.1   107945084   splicing factor 3B subunit 6-like protein 
 ghi-r.1   107939473   splicing factor 3B subunit 6-like protein 
 bna-r.1   106424595   splicing factor 3B subunit 6-like protein 
 bna-r.1   106419798   splicing factor 3B subunit 6-like protein 
 bna-r.1   106372354   splicing factor 3B subunit 6-like protein 
 cit-r.1   102627330   splicing factor 3B subunit 6-like protein 
 osa-u.5   4334543   splicing factor 3B subunit 6-like protein 
 zma-u.5   100382393   uncharacterized LOC100382393 
 zma-u.5   100281981   uncharacterized LOC100281981 
 tae-r.2   123123415   splicing factor 3B subunit 6-like protein 
 tae-r.2   123113908   splicing factor 3B subunit 6-like protein 
 tae-r.2   123105598   splicing factor 3B subunit 6-like protein 
 hvu-r.1   123452942   splicing factor 3B subunit 6-like protein 
 sbi-r.1   8057079   splicing factor 3B subunit 6-like protein 
 bdi-r.1   100842900   splicing factor 3B subunit 6-like protein 
 cre-r.1   CHLRE_03g158950v5   uncharacterized protein 

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Top 50 coexpressed genes to 107809274 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107809274 (nta-r.1 coexpression data)

CoexMap"107809274"


ntaLOC107809274 | Entrez gene ID : 107809274    
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 2 2 1 2 1 2 3 1 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta03040 [list] [network] Spliceosome (402 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (282 genes)  IEA  
GO CC
GO:0005686 [list] [network] U2 snRNP  (19 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (42 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (81 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (2607 genes)  IEA  
Protein XP_016489366.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 3,  cyto 2,  cyto_nucl 2  (predict for XP_016489366.1)
Subcellular
localization
TargetP
mito 7,  other 4  (predict for XP_016489366.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107809274
nta-r.1
for
107816076
sly-u.5
for
101267636
sot-r.1
for
102581420
ath-u.5
for
AT5G12190
gma-u.5
for
100802877
gma-u.5
for
100783741
bra-r.6
for
103855957
bra-r.6
for
103846660
vvi-u.5
for
100258249
ppo-u.5
for
7463876
ppo-u.5
for
7454882
mtr-u.5
for
11431415
ghi-r.1
for
107945084
ghi-r.1
for
107939473
bna-r.1
for
106424595
bna-r.1
for
106419798
bna-r.1
for
106372354
cit-r.1
for
102627330
osa-u.5
for
4334543
zma-u.5
for
100382393
zma-u.5
for
100281981
tae-r.2
for
123123415
tae-r.2
for
123113908
tae-r.2
for
123105598
hvu-r.1
for
123452942
sbi-r.1
for
8057079
bdi-r.1
for
100842900
cre-r.1
for
CHLRE_03g158950v5


Ortholog ID: 7147
Species nta nta sly sot ath gma gma bra bra vvi ppo ppo mtr ghi ghi bna bna bna cit osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107809274 LOC107816076 LOC101267636 LOC102581420 AT5G12190 LOC100802877 LOC100783741 LOC103855957 LOC103846660 LOC100258249 LOC7463876 LOC7454882 LOC11431415 LOC107945084 LOC107939473 LOC106424595 LOC106419798 LOC106372354 LOC102627330 LOC4334543 LOC100382393 LOC100281981 LOC123123415 LOC123113908 LOC123105598 LOC123452942 LOC8057079 LOC100842900 CHLRE_03g158950v5
Function* splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein RNA recognition motif (RRM) domain-containg protein splicing factor 3B subunit 6-like protein RNA-binding (RRM/RBD/RNP motifs) family protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein uncharacterized LOC100382393 uncharacterized LOC100281981 splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein splicing factor 3B subunit 6-like protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
nta03040 Spliceosome 2
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 5
ath04120 Ubiquitin mediated proteolysis 4
ath03420 Nucleotide excision repair 3
ath03040 Spliceosome 3
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 9
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 2
gma01240 Biosynthesis of cofactors 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi04144 Endocytosis 2
vvi04145 Phagosome 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04070 Phosphatidylinositol signaling system 4
ghi04075 Plant hormone signal transduction 4
ghi04626 Plant-pathogen interaction 4
ghi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 8
ghi04075 Plant hormone signal transduction 8
ghi04070 Phosphatidylinositol signaling system 6
ghi04626 Plant-pathogen interaction 6
ghi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 6
bna03040 Spliceosome 4
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma04141 Protein processing in endoplasmic reticulum 3
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03020 RNA polymerase 3
zma03420 Nucleotide excision repair 3
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03060 Protein export 2
sbi03040 Spliceosome 2
sbi03420 Nucleotide excision repair 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
cre04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107809274 107816076 101267636 102581420 831092 100802877 100783741 103855957 103846660 100258249 7463876 7454882 11431415 107945084 107939473 106424595 106419798 106372354 102627330 4334543 100382393 100281981 123123415 123113908 123105598 123452942 8057079 100842900 5723015
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