Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107811588   cleavage stimulating factor 64-like 
 nta-r.1   107808858   cleavage stimulating factor 64 
 sly-u.5   101252047   cleavage stimulating factor 64 
 sot-r.1   102583587   cleavage stimulating factor 64-like 
 sot-r.1   102582303   cleavage stimulating factor 64-like 
 ath-u.5   CSTF64   cleavage stimulating factor 64 
 gma-u.5   100806489   cleavage stimulating factor 64 
 gma-u.5   100794399   cleavage stimulating factor 64 
 bra-r.6   103852726   cleavage stimulating factor 64 
 bra-r.6   103830832   cleavage stimulating factor 64 
 vvi-u.5   100256296   cleavage stimulating factor 64 
 ppo-u.5   7480732   cleavage stimulating factor 64 
 mtr-u.5   25485016   cleavage stimulating factor 64 
 ghi-r.1   107889722   cleavage stimulating factor 64 
 ghi-r.1   107914071   cleavage stimulating factor 64 
 ghi-r.1   107957702   cleavage stimulating factor 64 
 bna-r.1   106395947   cleavage stimulating factor 64-like 
 bna-r.1   106353747   cleavage stimulating factor 64 
 bna-r.1   111199691   cleavage stimulating factor 64-like 
 cit-r.1   102615699   cleavage stimulating factor 64 
 osa-u.5   4349923   cleavage stimulating factor 64 
 zma-u.5   100304208   Cleavage stimulating factor 64 
 zma-u.5   100272317   cleavage stimulating factor 64-like 
 tae-r.2   123091274   cleavage stimulating factor 64 
 tae-r.2   123086654   cleavage stimulating factor 64 
 tae-r.2   123096257   cleavage stimulating factor 64 
 hvu-r.1   123447953   cleavage stimulating factor 64 
 sbi-r.1   8072756   cleavage stimulating factor 64 
 bdi-r.1   100840159   cleavage stimulating factor 64 
 cre-r.1   CHLRE_01g024200v5   uncharacterized protein 

close


Top 50 coexpressed genes to 107811588 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 107811588 (nta-r.1 coexpression data)

CoexMap"107811588"


ntaLOC107811588 | Entrez gene ID : 107811588      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 2 2 1 1 1 3 3 1 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta03015 [list] [network] mRNA surveillance pathway (250 genes)
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (37 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (12 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (573 genes)  IEA  
Protein XP_016492034.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  nucl 2,  cyto 2,  plas 2,  cyto_nucl 2,  nucl_plas 2,  cyto_plas 2  (predict for XP_016492034.1)
Subcellular
localization
TargetP
other 6,  scret 3  (predict for XP_016492034.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107811588
nta-r.1
for
107808858
sly-u.5
for
101252047
sot-r.1
for
102583587
sot-r.1
for
102582303
ath-u.5
for
CSTF64
gma-u.5
for
100806489
gma-u.5
for
100794399
bra-r.6
for
103852726
bra-r.6
for
103830832
vvi-u.5
for
100256296
ppo-u.5
for
7480732
mtr-u.5
for
25485016
ghi-r.1
for
107889722
ghi-r.1
for
107914071
ghi-r.1
for
107957702
bna-r.1
for
106395947
bna-r.1
for
106353747
bna-r.1
for
111199691
cit-r.1
for
102615699
osa-u.5
for
4349923
zma-u.5
for
100304208
zma-u.5
for
100272317
tae-r.2
for
123091274
tae-r.2
for
123086654
tae-r.2
for
123096257
hvu-r.1
for
123447953
sbi-r.1
for
8072756
bdi-r.1
for
100840159
cre-r.1
for
CHLRE_01g024200v5


Ortholog ID: 7091
Species nta nta sly sot sot ath gma gma bra bra vvi ppo mtr ghi ghi ghi bna bna bna cit osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107811588 LOC107808858 LOC101252047 LOC102583587 LOC102582303 CSTF64 LOC100806489 LOC100794399 LOC103852726 LOC103830832 LOC100256296 LOC7480732 LOC25485016 LOC107889722 LOC107914071 LOC107957702 LOC106395947 LOC106353747 LOC106432298 LOC102615699 LOC4349923 LOC100304208 LOC100272317 LOC123091274 LOC123086654 LOC123096257 LOC123447953 LOC8072756 LOC100840159 CHLRE_01g024200v5
Function* cleavage stimulating factor 64-like cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64-like cleavage stimulating factor 64-like cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64-like cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 Cleavage stimulating factor 64 cleavage stimulating factor 64-like cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 3
sot04130 SNARE interactions in vesicular transport 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 4
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 5
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 5
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 3
bra04145 Phagosome 2
bra04148 Efferocytosis 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi00230 Purine metabolism 2
ghi00740 Riboflavin metabolism 2
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 10
bna04016 MAPK signaling pathway - plant 4
bna04075 Plant hormone signal transduction 4
bna04626 Plant-pathogen interaction 4
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 5
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 4
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit01210 2-Oxocarboxylic acid metabolism 3
cit03015 mRNA surveillance pathway 2
cit00020 Citrate cycle (TCA cycle) 2
cit00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae04712 Circadian rhythm - plant 3
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae04712 Circadian rhythm - plant 4
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107811588 107808858 101252047 102583587 102582303 843510 100806489 100794399 103852726 103830832 100256296 7480732 25485016 107889722 107914071 107957702 106395947 106353747 106432298 102615699 4349923 100304208 100272317 123091274 123086654 123096257 123447953 8072756 100840159 5715255
The preparation time of this page was 0.2 [sec].