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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480732   cleavage stimulating factor 64 
 ppo-r.4   7480732   cleavage stimulating factor 64 
 ppo-m.4   7480732   cleavage stimulating factor 64 
 gma-u.5   100806489   cleavage stimulating factor 64 
 gma-u.5   100794399   cleavage stimulating factor 64 
 mtr-u.5   25485016   cleavage stimulating factor 64 
 ath-u.5   CSTF64   cleavage stimulating factor 64 
 vvi-u.5   100256296   cleavage stimulating factor 64 
 sly-u.5   101252047   cleavage stimulating factor 64 
 osa-u.5   4349923   cleavage stimulating factor 64 
 zma-u.5   100304208   Cleavage stimulating factor 64 
 zma-u.5   100272317   cleavage stimulating factor 64-like 

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Top 50 coexpressed genes to 7480732 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480732 (ppo-u.5 coexpression data)

CoexMap"7480732"


ppoLOC7480732 | Entrez gene ID : 7480732    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03015 [list] [network] mRNA surveillance pathway (164 genes)
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (12 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (10 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (348 genes)  IEA  
Protein XP_024452015.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  nucl_plas 4,  chlo 1,  cyto 1,  mito 1,  cysk 1  (predict for XP_024452015.1)
Subcellular
localization
TargetP
other 6,  scret 3  (predict for XP_024452015.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480732

.
ppo-r.4
for
7480732

.
ppo-m.4
for
7480732

.
gma-u.5
for
100806489

.
gma-u.5
for
100794399

.
mtr-u.5
for
25485016

.
ath-u.5
for
CSTF64

.
vvi-u.5
for
100256296

.
sly-u.5
for
101252047

.
osa-u.5
for
4349923

.
zma-u.5
for
100304208

.
zma-u.5
for
100272317

.


Ortholog ID: 7091
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol CSTF64 LOC100794399 LOC100806489 LOC101252047 LOC4349923 LOC100304208 LOC100272317 LOC103830832 LOC103852726 LOC100256296 LOC7480732 LOC25485016 LOC123086654 LOC123091274 LOC123447953 LOC107889722 LOC107914071 LOC106432298 LOC106395947 CHLRE_01g024200v5 LOC8072756 LOC102582303 LOC102583587 LOC102615699 LOC100840159 LOC107811588 LOC107808858
Function* cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 Cleavage stimulating factor 64 cleavage stimulating factor 64-like cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64-like uncharacterized protein cleavage stimulating factor 64 cleavage stimulating factor 64-like cleavage stimulating factor 64-like cleavage stimulating factor 64 cleavage stimulating factor 64 cleavage stimulating factor 64-like cleavage stimulating factor 64
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 5
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 5
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 3
bra04145 Phagosome 2
bra04148 Efferocytosis 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae04712 Circadian rhythm - plant 4
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae04712 Circadian rhythm - plant 3
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi00230 Purine metabolism 2
ghi00740 Riboflavin metabolism 2
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 4
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 10
bna04016 MAPK signaling pathway - plant 4
bna04075 Plant hormone signal transduction 4
bna04626 Plant-pathogen interaction 4
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 4
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 3
sot04130 SNARE interactions in vesicular transport 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit01210 2-Oxocarboxylic acid metabolism 3
cit03015 mRNA surveillance pathway 2
cit00020 Citrate cycle (TCA cycle) 2
cit00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843510 100794399 100806489 101252047 4349923 100304208 100272317 103830832 103852726 100256296 7480732 25485016 123086654 123091274 123447953 107889722 107914071 106432298 106395947 5715255 8072756 102582303 102583587 102615699 100840159 107811588 107808858
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