ATTED-II : GeneCoexpression result

Species	Gene	Description
nta-r.1	107814722	AP-3 complex subunit sigma
sly-u.5	101266464	AP-3 complex subunit sigma-like
sly-u.5	101260097	AP-3 complex subunit sigma-like
ath-u.5	AT3G50860	Clathrin adaptor complex small chain family protein
gma-u.5	100781795	clathrin adaptor complex small subunit superfamily protein
gma-u.5	100306517	uncharacterized LOC100306517
vvi-u.5	100254708	AP-3 complex subunit sigma
ppo-u.5	18099276	AP-3 complex subunit sigma
ppo-u.5	7473178	AP-3 complex subunit sigma
mtr-u.5	11411334	AP-3 complex subunit sigma
osa-u.5	4332139	AP-3 complex subunit sigma
zma-u.5	100191763	AP-3 complex subunit sigma-2

functional annotation

KEGG

nta04142 [list] [network] Lysosome (163 genes)

GO BP

GO:0015031 [list] [network] protein transport

(680 genes)

IEA

GO CC

GO MF

Protein

XP_016495659.1 [sequence] [blastp]
XP_075094165.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 3, chlo 1, nucl 1, extr 1, pero 1, cyto_plas 1	(predict for XP_016495659.1)
cyto 3, chlo 1, nucl 1, extr 1, pero 1, cyto_plas 1	(predict for XP_075094165.1)

Subcellular
localization
TargetP

other 8, mito 3	(predict for XP_016495659.1)
other 8, mito 3	(predict for XP_075094165.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107814722	sly-u.5 for 101266464	sly-u.5 for 101260097	ath-u.5 for AT3G50860	gma-u.5 for 100781795	gma-u.5 for 100306517	vvi-u.5 for 100254708	ppo-u.5 for 18099276	ppo-u.5 for 7473178	mtr-u.5 for 11411334	osa-u.5 for 4332139	zma-u.5 for 100191763

Ortholog ID: 6899

Species

nta

sly

sot

ath

gma

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

AP-3 complex subunit sigma

AP-3 complex subunit sigma-like

Clathrin adaptor complex small chain family protein

uncharacterized LOC100306517

clathrin adaptor complex small subunit superfamily protein

AP-3 complex subunit sigma

AP-3 complex subunit sigma-2

AP-3 complex subunit sigma

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3
nta04142	Lysosome	2
nta04144	Endocytosis	2
nta04145	Phagosome	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00051	Fructose and mannose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta00541	Biosynthesis of various nucleotide sugars	2
nta01240	Biosynthesis of cofactors	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot00510	N-Glycan biosynthesis	2
sot00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	3
gma00513	Various types of N-glycan biosynthesis	3
gma03040	Spliceosome	2
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	2
mtr03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	2
ghi04142	Lysosome	2
ghi03060	Protein export	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	2
bna00920	Sulfur metabolism	2
bna04122	Sulfur relay system	2
bna04142	Lysosome	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	2
bna00920	Sulfur metabolism	2
bna04122	Sulfur relay system	2
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3
osa03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3
tae00562	Inositol phosphate metabolism	3
tae00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00620	Pyruvate metabolism	4
tae04142	Lysosome	3
tae00562	Inositol phosphate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2
bdi03050	Proteasome	2
bdi03440	Homologous recombination	2

Expression

Expression pattern

Entrez Gene ID^*

107769874

107814722

101266464

101260097

102586463

102579906

824250

100306517

100781795

100254708

7473178

18099276

11411334

107945750

107909398

106425622

106444315

102626246

4332139

100191763

123098158

123092875

123449236

8085244

100838420

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107814722 (nta-r.1 coexpression data)

Top 50 enrichment test to 107814722 (nta-r.1 coexpression data)


Species	nta	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	cre	tae
Paralog	1	2	1	2	1	2	1	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107814722 (nta-r.1 coexpression data)

Top 50 enrichment test to 107814722 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**