Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107817815   protein RRC1 
 nta-r.1   107777073   protein RRC1 
 nta-r.1   107820695   protein RRC1 
 nta-r.1   107786092   protein RRC1-like 
 sly-u.5   101261199   protein RRC1-like 
 sot-r.1   102583876   U2 snRNP-associated SURP motif-containing protein-like 
 ath-u.5   AT5G10800   RNA recognition motif (RRM)-containing protein 
 ath-u.5   RRC1   RNA recognition motif (RRM)-containing protein 
 gma-u.5   100776093   protein RRC1 
 gma-u.5   100775729   protein RRC1 
 bra-r.6   103837075   protein RRC1 
 vvi-u.5   100262865   protein RRC1 
 ppo-u.5   7465430   protein RRC1 
 ppo-u.5   7489161   protein RRC1 
 mtr-u.5   11440509   protein RRC1-like 
 ghi-r.1   107948689   protein RRC1 
 ghi-r.1   107961709   protein RRC1 
 ghi-r.1   107940059   protein RRC1 
 bna-r.1   106365911   protein RRC1 
 bna-r.1   106365996   protein RRC1 
 cit-r.1   102626420   protein RRC1 
 osa-u.5   4328504   protein RRC1 
 zma-u.5   103626713   protein RRC1 
 zma-u.5   100304259   uncharacterized LOC100304259 
 tae-r.2   123049387   protein RRC1 
 tae-r.2   123123772   protein RRC1 
 tae-r.2   123132485   protein RRC1 
 hvu-r.1   123401031   protein RRC1-like 
 hvu-r.1   123435379   protein RRC1-like 
 sbi-r.1   8079403   protein RRC1 
 bdi-r.1   100843167   protein RRC1 
 bdi-r.1   100845412   protein RRC1 
 cre-r.1   CHLRE_03g158150v5   uncharacterized protein 

close


Top 50 coexpressed genes to 107817815 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 107817815 (nta-r.1 coexpression data)

CoexMap"107817815"


ntaLOC107817815 | Entrez gene ID : 107817815    
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 4 1 1 2 2 1 1 2 1 3 2 1 1 2 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta03040 [list] [network] Spliceosome (402 genes)
GO BP
GO:0006396 [list] [network] RNA processing  (1135 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4980 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (2607 genes)  IEA  
Protein XP_016499178.1 [sequence] [blastp]
XP_016499179.1 [sequence] [blastp]
XP_075102821.1 [sequence] [blastp]
XP_075102822.1 [sequence] [blastp]
XP_075102823.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_016499178.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_016499179.1)
nucl 5,  cyto 4,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_075102821.1)
nucl 9,  cyto 1  (predict for XP_075102822.1)
nucl 9,  cyto 1  (predict for XP_075102823.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_016499178.1)
other 7,  mito 3  (predict for XP_016499179.1)
other 7,  mito 3  (predict for XP_075102821.1)
other 9  (predict for XP_075102822.1)
other 9  (predict for XP_075102823.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107817815
nta-r.1
for
107777073
nta-r.1
for
107820695
nta-r.1
for
107786092
sly-u.5
for
101261199
sot-r.1
for
102583876
ath-u.5
for
AT5G10800
ath-u.5
for
RRC1
gma-u.5
for
100776093
gma-u.5
for
100775729
bra-r.6
for
103837075
vvi-u.5
for
100262865
ppo-u.5
for
7465430
ppo-u.5
for
7489161
mtr-u.5
for
11440509
ghi-r.1
for
107948689
ghi-r.1
for
107961709
ghi-r.1
for
107940059
bna-r.1
for
106365911
bna-r.1
for
106365996
cit-r.1
for
102626420
osa-u.5
for
4328504
zma-u.5
for
103626713
zma-u.5
for
100304259
tae-r.2
for
123049387
tae-r.2
for
123123772
tae-r.2
for
123132485
hvu-r.1
for
123401031
hvu-r.1
for
123435379
sbi-r.1
for
8079403
bdi-r.1
for
100843167
bdi-r.1
for
100845412
cre-r.1
for
CHLRE_03g158150v5


Ortholog ID: 5371
Species nta nta nta sly sot ath ath gma gma bra vvi ppo ppo mtr ghi ghi ghi bna bna cit osa zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol LOC107817815 LOC107777073 LOC107816795 LOC101261199 LOC102583876 AT5G10800 RRC1 LOC100776093 LOC100775729 LOC103837075 LOC100262865 LOC7465430 LOC7489161 LOC11440509 LOC107948689 LOC107961709 LOC107901654 LOC106365911 LOC106365996 LOC102626420 LOC4328504 LOC103626713 LOC100304259 LOC123123772 LOC123132485 LOC123136556 LOC123401031 LOC123435379 LOC8079403 LOC100843167 LOC100845412 CHLRE_03g158150v5
Function* protein RRC1 protein RRC1 protein RRC1 protein RRC1-like U2 snRNP-associated SURP motif-containing protein-like RNA recognition motif (RRM)-containing protein RNA recognition motif (RRM)-containing protein protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1-like protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1 uncharacterized LOC100304259 protein RRC1 protein RRC1 protein RRC1 protein RRC1-like protein RRC1-like protein RRC1 protein RRC1 protein RRC1 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03022 Basal transcription factors 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03250 Viral life cycle - HIV-1 3
bra03015 mRNA surveillance pathway 2
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03018 RNA degradation 2
tae00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03250 Viral life cycle - HIV-1 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03250 Viral life cycle - HIV-1 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107817815 107777073 107816795 101261199 102583876 830947 832577 100776093 100775729 103837075 100262865 7465430 7489161 11440509 107948689 107961709 107901654 106365911 106365996 102626420 4328504 103626713 100304259 123123772 123132485 123136556 123401031 123435379 8079403 100843167 100845412 5723030
The preparation time of this page was 0.2 [sec].