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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107886871   transcription factor SRM1 
 ghi-r.1   107909010   transcription factor SRM1 
 ghi-r.1   107898878   transcription factor SRM1 
 ghi-r.1   107920429   transcription factor SRM1 
 ath-u.5   AT5G08520   Duplicated homeodomain-like superfamily protein 
 ath-u.5   AT1G49010   Duplicated homeodomain-like superfamily protein 
 bra-r.6   103850701   transcription factor SRM1 
 bra-r.6   103871425   transcription factor MYBS1 
 bra-r.6   103832964   transcription factor MYBS1 
 bna-r.1   125593102   transcription factor SRM1-like 
 bna-r.1   125581614   transcription factor SRM1-like 
 bna-r.1   111209958   transcription factor SRM1-like 
 cit-r.1   102617702   transcription factor SRM1 
 cit-r.1   102615932   transcription factor MYBS1 
 gma-u.5   MYB109   MYB transcription factor MYB109 
 gma-u.5   100797809   transcription factor SRM1 
 gma-u.5   100812196   transcription factor SRM1 
 vvi-u.5   100268113   transcription factor SRM1 
 vvi-u.5   100245771   transcription factor MYBS1 
 ppo-u.5   18103714   transcription factor MYBS1 
 ppo-u.5   7486354   transcription factor SRM1 
 ppo-u.5   7457158   transcription factor SRM1 
 mtr-u.5   25482625   transcription factor SRM1 
 mtr-u.5   25493938   transcription factor MYBS1 
 sly-u.5   101245350   transcription factor SRM1-like 
 sly-u.5   101260117   transcription factor MYBS1 
 sot-r.1   102597153   transcription factor DIVARICATA-like 
 sot-r.1   102604472   transcription factor DIVARICATA 
 nta-r.1   107785112   transcription factor SRM1-like 
 nta-r.1   107790356   transcription factor SRM1 
 osa-u.5   4337399   transcription factor SRM1 
 osa-u.5   4323963   transcription factor MYBS1-like 
 zma-u.5   103634651   transcription factor MYBS1 
 zma-u.5   107275231   Duplicated homeodomain-like superfamily protein 
 zma-u.5   118475680   transcription factor MYBS1-like 
 tae-r.2   123151650   transcription factor MYBS1 
 tae-r.2   100873146   transcription factor MYBS1 
 tae-r.2   123191035   transcription factor SRM1 
 hvu-r.1   123408678   transcription factor MYBS1-like 
 hvu-r.1   123428351   transcription factor SRM1-like 
 sbi-r.1   8085866   transcription factor SRM1 
 sbi-r.1   8074545   transcription factor MYBS1 
 bdi-r.1   100840715   transcription factor MYBS1 
 bdi-r.1   100822300   transcription factor SRM1 
 cre-r.1   CHLRE_10g430750v5   uncharacterized protein 

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Top 50 coexpressed genes to 107886871 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107886871 (ghi-r.1 coexpression data)

CoexMap"107886871"


ghiLOC107886871 | Entrez gene ID : 107886871    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 2 3 2 3 2 2 2 2 2 3 3 2 2 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016666455.1 [sequence] [blastp]
XP_016666456.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  extr 1  (predict for XP_016666455.1)
nucl 9,  chlo 1,  extr 1  (predict for XP_016666456.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016666455.1)
other 9  (predict for XP_016666456.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107886871
ghi-r.1
for
107909010
ghi-r.1
for
107898878
ghi-r.1
for
107920429
ath-u.5
for
AT5G08520
ath-u.5
for
AT1G49010
bra-r.6
for
103850701
bra-r.6
for
103871425
bra-r.6
for
103832964
bna-r.1
for
125593102
bna-r.1
for
125581614
bna-r.1
for
111209958
cit-r.1
for
102617702
cit-r.1
for
102615932
gma-u.5
for
MYB109
gma-u.5
for
100797809
gma-u.5
for
100812196
vvi-u.5
for
100268113
vvi-u.5
for
100245771
ppo-u.5
for
18103714
ppo-u.5
for
7486354
ppo-u.5
for
7457158
mtr-u.5
for
25482625
mtr-u.5
for
25493938
sly-u.5
for
101245350
sly-u.5
for
101260117
sot-r.1
for
102597153
sot-r.1
for
102604472
nta-r.1
for
107785112
nta-r.1
for
107790356
osa-u.5
for
4337399
osa-u.5
for
4323963
zma-u.5
for
103634651
zma-u.5
for
107275231
zma-u.5
for
118475680
tae-r.2
for
123151650
tae-r.2
for
100873146
tae-r.2
for
123191035
hvu-r.1
for
123408678
hvu-r.1
for
123428351
sbi-r.1
for
8085866
sbi-r.1
for
8074545
bdi-r.1
for
100840715
bdi-r.1
for
100822300
cre-r.1
for
CHLRE_10g430750v5


Ortholog ID: 1638
Species ghi ghi ghi ath ath bra bra bra bna bna bna cit cit gma gma vvi vvi ppo ppo ppo mtr sly sly sot sot nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107886871 LOC107920429 LOC107894064 AT5G08520 AT1G49010 LOC103850701 LOC103871425 LOC103832964 LOC125593102 LOC125581614 LOC106381323 LOC102617702 LOC102615932 LOC100820272 LOC100779792 LOC100268113 LOC100245771 LOC18103714 LOC7486354 LOC7457158 LOC25482625 LOC101245350 LOC101260117 LOC102597153 LOC102604472 LOC107815176 LOC107761153 LOC4337399 LOC4323963 LOC103634651 LOC118475680 LOC100279751 LOC123151650 LOC100873146 LOC123055197 LOC123408678 LOC123428351 LOC8085866 LOC8074545 LOC100840715 LOC100822300 CHLRE_10g430750v5
Function* transcription factor SRM1 transcription factor SRM1 transcription factor SRM1 Duplicated homeodomain-like superfamily protein Duplicated homeodomain-like superfamily protein transcription factor SRM1 transcription factor MYBS1 transcription factor MYBS1 transcription factor SRM1-like transcription factor SRM1-like transcription factor MYBS1-like transcription factor SRM1 transcription factor MYBS1 transcription factor SRM1 transcription factor SRM1 transcription factor SRM1 transcription factor MYBS1 transcription factor MYBS1 transcription factor SRM1 transcription factor SRM1 transcription factor SRM1 transcription factor SRM1-like transcription factor MYBS1 transcription factor DIVARICATA-like transcription factor DIVARICATA transcription factor MYBS1 transcription factor MYBS1 transcription factor SRM1 transcription factor MYBS1-like transcription factor MYBS1 transcription factor MYBS1-like uncharacterized LOC100279751 transcription factor MYBS1 transcription factor MYBS1 transcription factor SRM1 transcription factor MYBS1-like transcription factor SRM1-like transcription factor SRM1 transcription factor MYBS1 transcription factor MYBS1 transcription factor SRM1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00062 Fatty acid elongation 2
bra01212 Fatty acid metabolism 2
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 7
bra00710 Carbon fixation by Calvin cycle 6
bra00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00620 Pyruvate metabolism 2
cit01240 Biosynthesis of cofactors 2
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 5
ppo01200 Carbon metabolism 5
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00999 Biosynthesis of various plant secondary metabolites 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa04712 Circadian rhythm - plant 3
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00790 Folate biosynthesis 2
tae01240 Biosynthesis of cofactors 2
tae04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107886871 107920429 107894064 830751 841324 103850701 103871425 103832964 125593102 125581614 106381323 102617702 102615932 100820272 100779792 100268113 100245771 18103714 7486354 7457158 25482625 101245350 101260117 102597153 102604472 107815176 107761153 4337399 4323963 103634651 118475680 100279751 123151650 100873146 123055197 123408678 123428351 8085866 8074545 100840715 100822300 66054993
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