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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107888562   probable ubiquitin conjugation factor E4 
 ath-u.5   AT5G15400   U-box domain-containing protein 
 gma-u.5   100811444   probable ubiquitin conjugation factor E4 
 gma-u.5   100806175   probable ubiquitin conjugation factor E4 
 vvi-u.5   100250848   probable ubiquitin conjugation factor E4 
 ppo-u.5   112323212   probable ubiquitin conjugation factor E4 
 ppo-u.5   7467871   probable ubiquitin conjugation factor E4 
 mtr-u.5   11412513   probable ubiquitin conjugation factor E4 
 sly-u.5   101267369   probable ubiquitin conjugation factor E4 
 osa-u.5   4333165   probable ubiquitin conjugation factor E4 
 zma-u.5   103636597   probable ubiquitin conjugation factor E4 
 zma-u.5   103639061   probable ubiquitin conjugation factor E4 

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Top 50 coexpressed genes to 107888562 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107888562 (ghi-r.1 coexpression data)

CoexMap"107888562"


ghiLOC107888562 | Entrez gene ID : 107888562    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 1 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04120 [list] [network] Ubiquitin mediated proteolysis (368 genes)
ghi04141 [list] [network] Protein processing in endoplasmic reticulum (593 genes)
GO BP
GO:0000209 [list] [network] protein polyubiquitination  (192 genes)  IEA  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (426 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0034450 [list] [network] ubiquitin-ubiquitin ligase activity  (4 genes)  IEA  
Protein XP_016668204.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  pero 1,  cysk 1  (predict for XP_016668204.2)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_016668204.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107888562
ath-u.5
for
AT5G15400
gma-u.5
for
100811444
gma-u.5
for
100806175
vvi-u.5
for
100250848
ppo-u.5
for
112323212
ppo-u.5
for
7467871
mtr-u.5
for
11412513
sly-u.5
for
101267369
osa-u.5
for
4333165
zma-u.5
for
103636597
zma-u.5
for
103639061


Ortholog ID: 6966
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo ppo mtr sot sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC107888562 LOC121221099 AT5G15400 LOC103846414 LOC103850982 LOC106372151 LOC106372152 LOC102621796 LOC100806175 LOC100811444 LOC100250848 LOC7467871 LOC112323212 LOC11412513 LOC102595360 LOC102593467 LOC107777862 LOC107827966 LOC4333165 LOC103639061 LOC103636597 LOC123167814 LOC123149201 LOC123413079 LOC8066278 LOC100835300 CHLRE_09g398350v5
Function* probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 U-box domain-containing protein probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 putative ubiquitin conjugation factor E4 putative ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 probable ubiquitin conjugation factor E4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 4
ath03050 Proteasome 4
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra04120 Ubiquitin mediated proteolysis 3
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra04120 Ubiquitin mediated proteolysis 3
bra03015 mRNA surveillance pathway 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 9
bna03420 Nucleotide excision repair 8
bna03460 Fanconi anemia pathway 4
bna04141 Protein processing in endoplasmic reticulum 3
bna00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 8
bna04120 Ubiquitin mediated proteolysis 8
bna03460 Fanconi anemia pathway 4
bna04141 Protein processing in endoplasmic reticulum 3
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03420 Nucleotide excision repair 3
cit03040 Spliceosome 2
cit03020 RNA polymerase 2
cit00562 Inositol phosphate metabolism 2
cit04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma03420 Nucleotide excision repair 3
gma03020 RNA polymerase 2
gma04141 Protein processing in endoplasmic reticulum 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
ppo04141 Protein processing in endoplasmic reticulum 4
ppo04144 Endocytosis 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03420 Nucleotide excision repair 2
mtr00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot03083 Polycomb repressive complex 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot04120 Ubiquitin mediated proteolysis 2
sot00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta03083 Polycomb repressive complex 2
nta03250 Viral life cycle - HIV-1 2
nta02010 ABC transporters 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta04146 Peroxisome 3
nta03022 Basal transcription factors 3
nta04141 Protein processing in endoplasmic reticulum 3
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 6
zma04141 Protein processing in endoplasmic reticulum 3
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 7
zma04141 Protein processing in endoplasmic reticulum 4
zma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 9
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 8
tae04120 Ubiquitin mediated proteolysis 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 5
sbi03083 Polycomb repressive complex 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107888562 121221099 831392 103846414 103850982 106372151 106372152 102621796 100806175 100811444 100250848 7467871 112323212 11412513 102595360 102593467 107777862 107827966 4333165 103639061 103636597 123167814 123149201 123413079 8066278 100835300 5720205
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