ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100790037	uncharacterized LOC100790037
gma-u.5	RTRP2	probable E3 ubiquitin-protein ligase rbrA-like protein
vvi-u.5	100241711	E3 ubiquitin-protein ligase RSL1
ppo-u.5	7487342	E3 ubiquitin-protein ligase RSL1
ppo-u.5	7478614	E3 ubiquitin-protein ligase RSL1
mtr-u.5	112420731	uncharacterized LOC112420731
sly-u.5	101251588	E3 ubiquitin-protein ligase RSL1-like
zma-u.5	100191809	putative RING zinc finger domain superfamily protein

functional annotation

KEGG

GO BP

GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process	(67 genes)	IEA
GO:0000209 [list] [network] protein polyubiquitination	(192 genes)	IEA
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(782 genes)	IEA

GO CC

GO:0000151 [list] [network] ubiquitin ligase complex	(426 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(13864 genes)	IEA

GO MF

GO:0031624 [list] [network] ubiquitin conjugating enzyme binding	(55 genes)	IEA
GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity	(349 genes)	IEA
GO:0061630 [list] [network] ubiquitin protein ligase activity	(513 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(1753 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(9083 genes)	IEA

Protein

XP_016669098.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, mito 1, pero 1

(predict for XP_016669098.1)

Subcellular
localization
TargetP

other 9

(predict for XP_016669098.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100790037	gma-u.5 for RTRP2	vvi-u.5 for 100241711	ppo-u.5 for 7487342	ppo-u.5 for 7478614	mtr-u.5 for 112420731	sly-u.5 for 101251588	zma-u.5 for 100191809

Ortholog ID: 4572

Species

ghi

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

zma

tae

hvu

sbi

bdi

Symbol

RTRP2

Function^*

uncharacterized LOC107953205

E3 ubiquitin-protein ligase RSL1

E3 ubiquitin-protein ligase RSL1-like

E3 ubiquitin-protein ligase RSL1

uncharacterized LOC100790037

probable E3 ubiquitin-protein ligase rbrA-like protein

E3 ubiquitin-protein ligase RSL1

uncharacterized LOC112420731

E3 ubiquitin-protein ligase RSL1-like

uncharacterized LOC102603567

probable E3 ubiquitin-protein ligase ARI9

E3 ubiquitin-protein ligase RSL1

E3 ubiquitin-protein ligase RSL1-like

putative RING zinc finger domain superfamily protein

uncharacterized LOC123111427

uncharacterized LOC123103236

E3 ubiquitin-protein ligase arih1-like

uncharacterized LOC123399745

uncharacterized LOC8067567

uncharacterized LOC100828328

uncharacterized LOC100830199

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	3
ghi04626	Plant-pathogen interaction	2
ghi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	4
gma04626	Plant-pathogen interaction	3
gma04016	MAPK signaling pathway - plant	2
gma04070	Phosphatidylinositol signaling system	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2
vvi04141	Protein processing in endoplasmic reticulum	2
vvi00020	Citrate cycle (TCA cycle)	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2
ppo03040	Spliceosome	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03420	Nucleotide excision repair	2
tae03460	Fanconi anemia pathway	2

Expression

Expression pattern

Entrez Gene ID^*

107953205

106346498

106347508

102623002

100790037

100786163

100241711

7478614

7487342

112420731

101251588

102603567

102602343

107767565

107761949

100191809

123111427

123103236

123410985

123399745

8067567

100828328

100830199

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100790037 (gma-u.5 coexpression data)

Top 50 enrichment test to 100790037 (gma-u.5 coexpression data)


Species	gma	vvi	ppo	mtr	sly	zma	bdi	hvu	bra	cit	bna	ath	sbi	ghi	osa	sot	nta	cre	tae
Paralog	2	1	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100790037 (gma-u.5 coexpression data)

Top 50 enrichment test to 100790037 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**