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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107889364   pentatricopeptide repeat-containing protein At4g38150 
 ghi-r.1   107892545   pentatricopeptide repeat-containing protein At4g38150 
 ath-u.5   AT5G03560   Tetratricopeptide repeat (TPR)-like superfamily protein 
 cit-r.1   102615043   pentatricopeptide repeat-containing protein At4g38150-like 
 gma-u.5   100789181   pentatricopeptide repeat-containing protein At4g38150 
 vvi-u.5   100256219   pentatricopeptide repeat-containing protein At4g38150 
 mtr-u.5   11412925   pentatricopeptide repeat-containing protein At4g38150 
 sly-u.5   101244998   pentatricopeptide repeat-containing protein 
 sot-r.1   102600073   pentatricopeptide repeat-containing protein At4g38150-like 
 nta-r.1   107784022   uncharacterized LOC107784022 
 nta-r.1   107795709   uncharacterized LOC107795709 
 osa-u.5   4340848   pentatricopeptide repeat-containing protein At4g38150 
 zma-u.5   100272969   Tetratricopeptide repeat (TPR)-like superfamily protein 
 tae-r.2   123180117   pentatricopeptide repeat-containing protein At4g38150 
 hvu-r.1   123397249   pentatricopeptide repeat-containing protein At4g38150 
 sbi-r.1   8060473   pentatricopeptide repeat-containing protein At4g38150 
 bdi-r.1   100842815   pentatricopeptide repeat-containing protein At4g38150 

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Top 50 coexpressed genes to 107889364 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107889364 (ghi-r.1 coexpression data)

CoexMap"107889364"


ghiLOC107889364 | Entrez gene ID : 107889364    
Species ghi ath cit gma vvi mtr sly sot nta osa zma tae hvu sbi bdi ppo cre bra bna
Paralog 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016669248.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 5,  chlo_mito 5  (predict for XP_016669248.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_016669248.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107889364
ghi-r.1
for
107892545
ath-u.5
for
AT5G03560
cit-r.1
for
102615043
gma-u.5
for
100789181
vvi-u.5
for
100256219
mtr-u.5
for
11412925
sly-u.5
for
101244998
sot-r.1
for
102600073
nta-r.1
for
107784022
nta-r.1
for
107795709
osa-u.5
for
4340848
zma-u.5
for
100272969
tae-r.2
for
123180117
hvu-r.1
for
123397249
sbi-r.1
for
8060473
bdi-r.1
for
100842815


Ortholog ID: 12464
Species ghi ghi ath cit gma vvi mtr sly sot nta nta osa zma tae hvu sbi bdi
Symbol LOC107889364 LOC107892545 AT5G03560 LOC102615043 LOC100789181 LOC100256219 LOC11412925 LOC101244998 LOC102600073 LOC107784022 LOC107795709 LOC4340848 LOC100272969 LOC123180117 LOC123397249 LOC8060473 LOC100842815
Function* pentatricopeptide repeat-containing protein At4g38150 pentatricopeptide repeat-containing protein At4g38150 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g38150-like pentatricopeptide repeat-containing protein At4g38150 pentatricopeptide repeat-containing protein At4g38150 pentatricopeptide repeat-containing protein At4g38150 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g38150-like uncharacterized LOC107784022 uncharacterized LOC107795709 pentatricopeptide repeat-containing protein At4g38150 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g38150 pentatricopeptide repeat-containing protein At4g38150 pentatricopeptide repeat-containing protein At4g38150 pentatricopeptide repeat-containing protein At4g38150
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00750 Vitamin B6 metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00750 Vitamin B6 metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 5
nta03018 RNA degradation 5
nta03040 Spliceosome 3
nta04144 Endocytosis 3
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 5
nta03018 RNA degradation 5
nta03040 Spliceosome 3
nta04144 Endocytosis 3
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03030 DNA replication 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
tae00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107889364 107892545 831789 102615043 100789181 100256219 11412925 101244998 102600073 107784022 107795709 4340848 100272969 123180117 123397249 8060473 100842815
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