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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107890110   50S ribosomal protein L22, chloroplastic 
 ghi-r.1   107928199   50S ribosomal protein L22 
 ghi-r.1   107925692   50S ribosomal protein L22, chloroplastic 
 ath-u.5   AT4G28360   Ribosomal protein L22p/L17e family protein 
 ath-u.5   AT1G52370   Ribosomal protein L22p/L17e family protein 
 bra-r.6   103855011   50S ribosomal protein L22 
 bra-r.6   108872310   50S ribosomal protein L22, chloroplastic 
 bna-r.1   106437316   50S ribosomal protein L22 
 bna-r.1   125605311   50S ribosomal protein L22-like 
 bna-r.1   106424824   50S ribosomal protein L22, chloroplastic-like 
 cit-r.1   102608144   uncharacterized LOC102608144 
 gma-u.5   100793854   50S ribosomal protein L22, chloroplastic 
 gma-u.5   100789663   50S ribosomal protein L22, chloroplastic 
 vvi-u.5   100266839   uncharacterized LOC100266839 
 ppo-u.5   7469929   uncharacterized LOC7469929 
 mtr-u.5   11418865   uncharacterized LOC11418865 
 sly-u.5   101254078   uncharacterized LOC101254078 
 sot-r.1   102595065   50S ribosomal protein L22-like 
 sot-r.1   102601080   54S ribosomal protein L22, mitochondrial-like 
 nta-r.1   107810798   uncharacterized LOC107810798 
 nta-r.1   107790726   uncharacterized LOC107790726 
 nta-r.1   107786285   uncharacterized LOC107786285 
 osa-u.5   4326653   uncharacterized LOC4326653 
 zma-u.5   100274437   Ribosomal protein L22p/L17e-like 
 tae-r.2   123075909   50S ribosomal protein L22-like 
 tae-r.2   123075920   50S ribosomal protein L22-like 
 hvu-r.1   123438842   uncharacterized LOC123438842 
 sbi-r.1   8069115   uncharacterized LOC8069115 
 bdi-r.1   100833607   39S ribosomal protein L22, mitochondrial 
 bdi-r.1   100829255   uncharacterized LOC100829255 
 cre-r.1   CHLRE_05g242950v5   uncharacterized protein 

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Top 50 coexpressed genes to 107890110 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107890110 (ghi-r.1 coexpression data)

CoexMap"107890110"


ghiLOC107890110 | Entrez gene ID : 107890110    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 2 3 1 2 1 1 1 1 2 3 1 1 2 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03010 [list] [network] Ribosome (2429 genes)
GO BP
GO:0006412 [list] [network] translation  (1487 genes)  IEA  
GO CC
GO:0005762 [list] [network] mitochondrial large ribosomal subunit  (54 genes)  IEA  
GO:0005840 [list] [network] ribosome  (1110 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (1075 genes)  IEA  
Protein XP_016670111.2 [sequence] [blastp]
XP_040932574.1 [sequence] [blastp]
XP_040932575.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 7,  chlo 2  (predict for XP_016670111.2)
mito 7,  chlo 2  (predict for XP_040932574.1)
mito 7,  chlo 2  (predict for XP_040932575.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_016670111.2)
mito 9  (predict for XP_040932574.1)
mito 9  (predict for XP_040932575.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107890110
ghi-r.1
for
107928199
ghi-r.1
for
107925692
ath-u.5
for
AT4G28360
ath-u.5
for
AT1G52370
bra-r.6
for
103855011
bra-r.6
for
108872310
bna-r.1
for
106437316
bna-r.1
for
125605311
bna-r.1
for
106424824
cit-r.1
for
102608144
gma-u.5
for
100793854
gma-u.5
for
100789663
vvi-u.5
for
100266839
ppo-u.5
for
7469929
mtr-u.5
for
11418865
sly-u.5
for
101254078
sot-r.1
for
102595065
sot-r.1
for
102601080
nta-r.1
for
107810798
nta-r.1
for
107790726
nta-r.1
for
107786285
osa-u.5
for
4326653
zma-u.5
for
100274437
tae-r.2
for
123075909
tae-r.2
for
123075920
hvu-r.1
for
123438842
sbi-r.1
for
8069115
bdi-r.1
for
100833607
bdi-r.1
for
100829255
cre-r.1
for
CHLRE_05g242950v5


Ortholog ID: 5356
Species ghi ghi ghi ath ath bra bra bna bna bna cit gma gma vvi ppo mtr sly sot sot nta nta nta osa zma tae tae hvu sbi bdi bdi cre
Symbol LOC107890110 LOC107928199 LOC107925692 AT4G28360 AT1G52370 LOC103855011 LOC108872310 LOC106437316 LOC125605311 LOC106405532 LOC102608144 LOC100793854 LOC100789663 LOC100266839 LOC7469929 LOC11418865 LOC101254078 LOC102595065 LOC102601080 LOC107790726 LOC107786285 LOC107768257 LOC4326653 LOC100274437 LOC123075909 LOC123075920 LOC123438842 LOC8069115 LOC100833607 LOC100829255 CHLRE_05g242950v5
Function* 50S ribosomal protein L22, chloroplastic 50S ribosomal protein L22 50S ribosomal protein L22, chloroplastic Ribosomal protein L22p/L17e family protein Ribosomal protein L22p/L17e family protein 50S ribosomal protein L22 50S ribosomal protein L22, chloroplastic 50S ribosomal protein L22 50S ribosomal protein L22-like 50S ribosomal protein L22-like uncharacterized LOC102608144 50S ribosomal protein L22, chloroplastic 50S ribosomal protein L22, chloroplastic uncharacterized LOC100266839 uncharacterized LOC7469929 uncharacterized LOC11418865 uncharacterized LOC101254078 50S ribosomal protein L22-like 54S ribosomal protein L22, mitochondrial-like uncharacterized LOC107790726 uncharacterized LOC107786285 uncharacterized LOC107768257 uncharacterized LOC4326653 Ribosomal protein L22p/L17e-like 50S ribosomal protein L22-like 50S ribosomal protein L22-like uncharacterized LOC123438842 uncharacterized LOC8069115 39S ribosomal protein L22, mitochondrial uncharacterized LOC100829255 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 3
ghi03010 Ribosome 2
ghi00340 Histidine metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 3
ath00020 Citrate cycle (TCA cycle) 2
ath01200 Carbon metabolism 2
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00280 Valine, leucine and isoleucine degradation 2
bna00410 beta-Alanine metabolism 2
bna00640 Propanoate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00280 Valine, leucine and isoleucine degradation 2
bna00410 beta-Alanine metabolism 2
bna00640 Propanoate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00280 Valine, leucine and isoleucine degradation 2
bna00410 beta-Alanine metabolism 2
bna00640 Propanoate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo00061 Fatty acid biosynthesis 2
ppo01212 Fatty acid metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 13
sly03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 3
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 15
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107890110 107928199 107925692 828951 841667 103855011 108872310 106437316 125605311 106405532 102608144 100793854 100789663 100266839 7469929 11418865 101254078 102595065 102601080 107790726 107786285 107768257 4326653 100274437 123075909 123075920 123438842 8069115 100833607 100829255 5726456
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