ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107890767	probable protein phosphatase 2C 8
ath-u.5	HAI3	highly ABA-induced PP2C protein 3
ath-u.5	PP2CA	protein phosphatase 2CA
ath-u.5	HAI1	PP2C protein (Clade A protein phosphatases type 2C)
gma-u.5	100776356	protein phosphatase 2C 37
gma-u.5	100781388	protein phosphatase 2C 37
gma-u.5	100785905	probable protein phosphatase 2C 8
vvi-u.5	100247958	protein phosphatase 2C 37
vvi-u.5	100267287	protein phosphatase 2C 51
vvi-u.5	100255251	probable protein phosphatase 2C 24
ppo-u.5	112324315	protein phosphatase 2C 51
ppo-u.5	7489826	protein phosphatase 2C 51
mtr-u.5	11435594	protein phosphatase 2C 37
mtr-u.5	25482353	protein phosphatase 2C 51
mtr-u.5	25489354	probable protein phosphatase 2C 24
sly-u.5	101244003	probable protein phosphatase 2C 24
sly-u.5	101248778	protein phosphatase 2C 37
osa-u.5	9270549	probable protein phosphatase 2C 49
osa-u.5	4324182	probable protein phosphatase 2C 8
osa-u.5	4339671	protein phosphatase 2C 51-like
zma-u.5	100282657	uncharacterized LOC100282657
zma-u.5	100285223	protein phosphatase 2C ABI1
zma-u.5	100279578	uncharacterized LOC100279578

Top 50 coexpressed genes to 107890767 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107890767 (ghi-r.1 coexpression data)

CoexMap"107890767"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi04016 [list] [network] MAPK signaling pathway - plant (428 genes)

ghi04075 [list] [network] Plant hormone signal transduction (1215 genes)

GO BP

GO:0035970 [list] [network] peptidyl-threonine dephosphorylation

(172 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(7681 genes)

IEA

GO MF

GO:0004722 [list] [network] protein serine/threonine phosphatase activity	(301 genes)	IEA
GO:0043169 [list] [network] cation binding	(4837 genes)	IEA

Protein

XP_040957041.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 3

(predict for XP_040957041.1)

Subcellular
localization
TargetP

other 8, chlo 3

(predict for XP_040957041.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107890767	ath-u.5 for HAI3	ath-u.5 for PP2CA	ath-u.5 for HAI1	gma-u.5 for 100776356	gma-u.5 for 100781388	gma-u.5 for 100785905	vvi-u.5 for 100247958	vvi-u.5 for 100267287	vvi-u.5 for 100255251	ppo-u.5 for 112324315	ppo-u.5 for 7489826	mtr-u.5 for 11435594	mtr-u.5 for 25482353	mtr-u.5 for 25489354	sly-u.5 for 101244003	sly-u.5 for 101248778	osa-u.5 for 9270549	osa-u.5 for 4324182	osa-u.5 for 4339671	zma-u.5 for 100282657	zma-u.5 for 100285223	zma-u.5 for 100279578

Ortholog

Ortholog ID: 501

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107906580

LOC121215534

HAI3

PP2CA

Function^*

probable protein phosphatase 2C 24

highly ABA-induced PP2C protein 3

protein phosphatase 2CA

protein phosphatase 2C 37

protein phosphatase 2C 3

probable protein phosphatase 2C 78

protein phosphatase 2C 37

protein phosphatase 2C 51-like

protein phosphatase 2C 37

probable protein phosphatase 2C 51

probable protein phosphatase 2C 24

protein phosphatase 2C 51

protein phosphatase 2C 37

protein phosphatase 2C 51

protein phosphatase 2C 51-like

protein phosphatase 2C 37

probable protein phosphatase 2C 24

protein phosphatase 2C 37-like

probable protein phosphatase 2C 49

probable protein phosphatase 2C 9

uncharacterized LOC103636504

uncharacterized LOC100279578

probable protein phosphatase 2C 68

probable protein phosphatase 2C 8

probable protein phosphatase 2C 68

probable protein phosphatase 2C 9

uncharacterized LOC110432288

probable protein phosphatase 2C 68

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	4
ghi04075	Plant hormone signal transduction	4
ghi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	8
ath04016	MAPK signaling pathway - plant	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	5
bra04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	4
bra04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	6
bna04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	4
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	7
cit04016	MAPK signaling pathway - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	4
cit04075	Plant hormone signal transduction	4
cit00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	4
gma04075	Plant hormone signal transduction	4
gma00500	Starch and sucrose metabolism	2
gma02010	ABC transporters	2
gma04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	3
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	4
vvi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	4
vvi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	4
ppo04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	7
ppo04016	MAPK signaling pathway - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	6
mtr04016	MAPK signaling pathway - plant	5
mtr00562	Inositol phosphate metabolism	2
mtr04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	3
mtr04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	3
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	6
sly04016	MAPK signaling pathway - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	7
sot04016	MAPK signaling pathway - plant	6
sot00564	Glycerophospholipid metabolism	2
sot00565	Ether lipid metabolism	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	8
nta04075	Plant hormone signal transduction	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	8
nta04075	Plant hormone signal transduction	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	8
osa04016	MAPK signaling pathway - plant	6
osa00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	7
osa04016	MAPK signaling pathway - plant	6
osa00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	9
zma04075	Plant hormone signal transduction	9
zma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	11
zma04016	MAPK signaling pathway - plant	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	9
tae04075	Plant hormone signal transduction	9
tae00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	12
tae04075	Plant hormone signal transduction	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	5
hvu00310	Lysine degradation	3
hvu04016	MAPK signaling pathway - plant	3
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	8
sbi04016	MAPK signaling pathway - plant	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	4
sbi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	6
bdi04016	MAPK signaling pathway - plant	5

Expression

Expression pattern

Entrez Gene ID^*

107906580

121215534

817487

820314

103845976

103843946

106433287

106452531

102629888

102621444

100796161

100807235

100255251

100267287

7489826

7467562

11435594

25482353

101249794

101248778

102601835

107760683

107779894

9270549

4327465

103636504

100279578

123103505

123111722

123444003

123395405

8058897

110432288

100823313

5724961

The preparation time of this page was 0.5 [sec].


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	3	3	3	2	3	2	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107890767 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107890767 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**