ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107890843	RNA-binding protein 39
ghi-r.1	107922375	RNA-binding protein 39
ghi-r.1	107950593	RNA-binding protein 39
ghi-r.1	107936976	RNA-binding protein 39
ath-u.5	AT2G16940	Splicing factor, CC1-like protein
ath-u.5	AT5G09880	Splicing factor, CC1-like protein
bra-r.6	103850353	RNA-binding protein 39
bra-r.6	103846856	RNA-binding protein 39
bra-r.6	103846010	RNA-binding protein 39
bna-r.1	111197874	RNA-binding protein 39
bna-r.1	106419339	RNA-binding protein 39-like
bna-r.1	106428697	RNA-binding protein 39
cit-r.1	102614661	uncharacterized LOC102614661
cit-r.1	102610927	uncharacterized LOC102610927
gma-u.5	100789839	RNA-binding protein 39
gma-u.5	100793461	RNA-binding protein 39
gma-u.5	100795336	RNA-binding protein 39
vvi-u.5	100253813	uncharacterized LOC100253813
vvi-u.5	100243992	uncharacterized LOC100243992
ppo-u.5	7453655	uncharacterized LOC7453655
ppo-u.5	7476432	uncharacterized LOC7476432
ppo-u.5	7494232	uncharacterized LOC7494232
mtr-u.5	112417170	RNA-binding protein 39
mtr-u.5	11423679	RNA-binding protein 39
mtr-u.5	11426905	RNA-binding protein 39
sly-u.5	101259103	uncharacterized LOC101259103
sot-r.1	102604200	RNA-binding protein 39
nta-r.1	107772496	uncharacterized LOC107772496
nta-r.1	107827897	uncharacterized LOC107827897
osa-u.5	9269341	uncharacterized LOC9269341
osa-u.5	9270364	uncharacterized LOC9270364
zma-u.5	100383130	Splicing factor CC1-like
zma-u.5	100278875	uncharacterized LOC100278875
zma-u.5	100274411	uncharacterized LOC100274411
tae-r.2	123084916	RNA-binding protein 39
tae-r.2	123042324	RNA-binding protein 39
tae-r.2	123180927	RNA-binding protein 39
hvu-r.1	123429591	RNA-binding protein 39-like
hvu-r.1	123449474	RNA-binding protein 39-like
sbi-r.1	8064864	RNA-binding protein 39
sbi-r.1	8080541	RNA-binding protein 39
bdi-r.1	100839727	RNA-binding protein 39
bdi-r.1	100845331	RNA-binding protein 39
cre-r.1	CHLRE_17g733208v5	uncharacterized protein
cre-r.1	CHLRE_04g213905v5	uncharacterized protein

Top 50 coexpressed genes to 107890843 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107890843 (ghi-r.1 coexpression data)

CoexMap"107890843"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006397 [list] [network] mRNA processing

(513 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(7681 genes)

IEA

GO MF

GO:1990446 [list] [network] U1 snRNP binding	(8 genes)	IEA
GO:0003723 [list] [network] RNA binding	(3053 genes)	IEA

Protein

XP_040938241.1 [sequence] [blastp]
XP_040938242.1 [sequence] [blastp]
XP_040938243.1 [sequence] [blastp]
XP_040938244.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_040938241.1)
nucl 10	(predict for XP_040938242.1)
nucl 10	(predict for XP_040938243.1)
nucl 10	(predict for XP_040938244.1)

Subcellular
localization
TargetP

other 9	(predict for XP_040938241.1)
other 9	(predict for XP_040938242.1)
other 9	(predict for XP_040938243.1)
other 9	(predict for XP_040938244.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107890843	ghi-r.1 for 107922375	ghi-r.1 for 107950593	ghi-r.1 for 107936976	ath-u.5 for AT2G16940	ath-u.5 for AT5G09880	bra-r.6 for 103850353	bra-r.6 for 103846856	bra-r.6 for 103846010	bna-r.1 for 111197874	bna-r.1 for 106419339	bna-r.1 for 106428697	cit-r.1 for 102614661	cit-r.1 for 102610927	gma-u.5 for 100789839	gma-u.5 for 100793461	gma-u.5 for 100795336	vvi-u.5 for 100253813	vvi-u.5 for 100243992	ppo-u.5 for 7453655	ppo-u.5 for 7476432	ppo-u.5 for 7494232	mtr-u.5 for 112417170	mtr-u.5 for 11423679	mtr-u.5 for 11426905	sly-u.5 for 101259103	sot-r.1 for 102604200	nta-r.1 for 107772496	nta-r.1 for 107827897	osa-u.5 for 9269341	osa-u.5 for 9270364	zma-u.5 for 100383130	zma-u.5 for 100278875	zma-u.5 for 100274411	tae-r.2 for 123084916	tae-r.2 for 123042324	tae-r.2 for 123180927	hvu-r.1 for 123429591	hvu-r.1 for 123449474	sbi-r.1 for 8064864	sbi-r.1 for 8080541	bdi-r.1 for 100839727	bdi-r.1 for 100845331	cre-r.1 for CHLRE_17g733208v5	cre-r.1 for CHLRE_04g213905v5

Ortholog

Ortholog ID: 2699

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RNA-binding protein 39

Splicing factor, CC1-like protein

RNA-binding protein 39

RNA-binding protein 39-like

RNA-binding protein 39

uncharacterized LOC102614661

uncharacterized LOC102610927

RNA-binding protein 39

uncharacterized LOC100253813

uncharacterized LOC100243992

uncharacterized LOC7453655

uncharacterized LOC7476432

uncharacterized LOC7494232

RNA-binding protein 39

uncharacterized LOC101259103

RNA-binding protein 39

uncharacterized LOC107772496

uncharacterized LOC107827897

uncharacterized LOC9269341

uncharacterized LOC9270364

Splicing factor CC1-like

uncharacterized LOC100278875

uncharacterized LOC100274411

RNA-binding protein 39

RNA-binding protein 39-like

RNA-binding protein 39

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	9
gma03082	ATP-dependent chromatin remodeling	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	7
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2
mtr00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	7
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2
hvu03013	Nucleocytoplasmic transport	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

107950593

107928875

107908645

816197

830848

103850353

103846856

103846010

106419339

106428697

106418711

102614661

102610927

100789839

100793461

100802446

100253813

100243992

7453655

7476432

7494232

112417170

11423679

11426905

101259103

102604200

107772496

107827897

9269341

9270364

100383130

100278875

100274411

123084916

123042324

123119138

123429591

123449474

8064864

8080541

100839727

100845331

5725114

66053121

The preparation time of this page was 2.7 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	2	3	2	3	3	1	1	2	2	3	3	2	2	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107890843 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107890843 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**