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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107891001   ribosomal protein S2, mitochondrial 
 ghi-r.1   107913328   UTP--glucose-1-phosphate uridylyltransferase 
 ath-u.5   RPS2   ribosomal protein S2 
 bra-r.6   103855170   ribosomal protein S2, mitochondrial 
 bra-r.6   103859006   ribosomal protein S2, mitochondrial 
 bna-r.1   125609169   ribosomal protein S2, mitochondrial-like 
 bna-r.1   106438963   ribosomal protein S2, mitochondrial 
 bna-r.1   106447611   ribosomal protein S2, mitochondrial 
 cit-r.1   102627594   UTP--glucose-1-phosphate uridylyltransferase-like 
 gma-u.5   100812583   UTP--glucose-1-phosphate uridylyltransferase 
 vvi-u.5   100264069   small ribosomal subunit protein uS2m 
 ppo-u.5   7493860   UTP--glucose-1-phosphate uridylyltransferase 
 mtr-u.5   112422206   UTP--glucose-1-phosphate uridylyltransferase 2 
 mtr-u.5   11414320   UTP--glucose-1-phosphate uridylyltransferase 
 sly-u.5   101263844   RPS2 and Glyco-transfer-GTA type domain-containing protein 
 sot-r.1   102586654   ribosomal protein S2, mitochondrial 
 nta-r.1   107819480   UTP--glucose-1-phosphate uridylyltransferase 
 nta-r.1   107807768   UTP--glucose-1-phosphate uridylyltransferase 
 osa-u.5   112937437   uncharacterized LOC112937437 
 osa-u.5   107279602   uncharacterized LOC107279602 
 zma-u.5   118474731   uncharacterized LOC118474731 
 zma-u.5   118475796   uncharacterized LOC118475796 
 hvu-r.1   123418204   uncharacterized LOC123418204 
 sbi-r.1   rps2B   ribosomal protein S2 

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Top 50 coexpressed genes to 107891001 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107891001 (ghi-r.1 coexpression data)

CoexMap"107891001"


ghiLOC107891001 | Entrez gene ID : 107891001    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma hvu sbi bdi cre tae
Paralog 2 1 2 3 1 1 1 1 2 1 1 2 2 2 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00040 [list] [network] Pentose and glucuronate interconversions (333 genes)
ghi00052 [list] [network] Galactose metabolism (140 genes)
ghi00500 [list] [network] Starch and sucrose metabolism (349 genes)
ghi00520 [list] [network] Amino sugar and nucleotide sugar metabolism (312 genes)
ghi00541 [list] [network] Biosynthesis of various nucleotide sugars (70 genes)
ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)
ghi01250 [list] [network] Biosynthesis of nucleotide sugars (245 genes)
GO BP
GO:0006011 [list] [network] UDP-alpha-D-glucose metabolic process  (12 genes)  IEA  
GO:0005977 [list] [network] glycogen metabolic process  (46 genes)  IEA  
GO:0015074 [list] [network] DNA integration  (103 genes)  IEA  
GO:0006412 [list] [network] translation  (1487 genes)  IEA  
GO CC
GO:0005763 [list] [network] mitochondrial small ribosomal subunit  (20 genes)  IEA  
GO:0005840 [list] [network] ribosome  (1110 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003983 [list] [network] UTP:glucose-1-phosphate uridylyltransferase activity  (12 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (1075 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (9083 genes)  IEA  
Protein XP_016671111.1 [sequence] [blastp]
XP_016671118.1 [sequence] [blastp]
XP_016671127.1 [sequence] [blastp]
XP_016671152.1 [sequence] [blastp]
XP_040937894.1 [sequence] [blastp]
XP_040937895.1 [sequence] [blastp]
XP_040937896.1 [sequence] [blastp]
XP_040937897.1 [sequence] [blastp]
XP_040937898.1 [sequence] [blastp]
XP_040937899.1 [sequence] [blastp]
XP_040937900.1 [sequence] [blastp]
XP_040937901.1 [sequence] [blastp]
XP_040937902.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_016671111.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_016671118.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_016671127.1)
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_016671152.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_040937894.1)
chlo 9  (predict for XP_040937895.1)
chlo 9  (predict for XP_040937896.1)
chlo 7,  mito 1,  cyto_mito 1,  nucl 1,  extr 1  (predict for XP_040937897.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_040937898.1)
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_040937899.1)
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_040937900.1)
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_040937901.1)
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_040937902.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_016671111.1)
mito 4  (predict for XP_016671118.1)
mito 4  (predict for XP_016671127.1)
mito 4  (predict for XP_016671152.1)
mito 4  (predict for XP_040937894.1)
mito 4  (predict for XP_040937895.1)
mito 4  (predict for XP_040937896.1)
mito 4  (predict for XP_040937897.1)
mito 4  (predict for XP_040937898.1)
mito 4  (predict for XP_040937899.1)
mito 4  (predict for XP_040937900.1)
mito 4  (predict for XP_040937901.1)
mito 4  (predict for XP_040937902.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107891001
ghi-r.1
for
107913328
ath-u.5
for
RPS2
bra-r.6
for
103855170
bra-r.6
for
103859006
bna-r.1
for
125609169
bna-r.1
for
106438963
bna-r.1
for
106447611
cit-r.1
for
102627594
gma-u.5
for
100812583
vvi-u.5
for
100264069
ppo-u.5
for
7493860
mtr-u.5
for
112422206
mtr-u.5
for
11414320
sly-u.5
for
101263844
sot-r.1
for
102586654
nta-r.1
for
107819480
nta-r.1
for
107807768
osa-u.5
for
112937437
osa-u.5
for
107279602
zma-u.5
for
118474731
zma-u.5
for
118475796
hvu-r.1
for
123418204
sbi-r.1
for
rps2B


Ortholog ID: 7578
Species ghi ghi ath bra bra bna bna bna cit gma vvi ppo mtr mtr sly sot nta nta osa osa zma zma hvu sbi
Symbol LOC107891001 LOC107913328 RPS2 LOC103855170 LOC103859006 LOC125609169 LOC106438963 LOC106418691 LOC102627594 LOC100812583 LOC100264069 LOC7493860 LOC112422206 LOC11414320 LOC101263844 LOC102586654 LOC107819480 LOC107807768 LOC112937437 LOC107279602 LOC118474731 LOC118475796 LOC123418204 rps2B
Function* ribosomal protein S2, mitochondrial UTP--glucose-1-phosphate uridylyltransferase ribosomal protein S2 ribosomal protein S2, mitochondrial ribosomal protein S2, mitochondrial ribosomal protein S2, mitochondrial-like ribosomal protein S2, mitochondrial ribosomal protein S2, mitochondrial-like UTP--glucose-1-phosphate uridylyltransferase-like UTP--glucose-1-phosphate uridylyltransferase small ribosomal subunit protein uS2m UTP--glucose-1-phosphate uridylyltransferase UTP--glucose-1-phosphate uridylyltransferase 2 UTP--glucose-1-phosphate uridylyltransferase RPS2 and Glyco-transfer-GTA type domain-containing protein ribosomal protein S2, mitochondrial UTP--glucose-1-phosphate uridylyltransferase UTP--glucose-1-phosphate uridylyltransferase uncharacterized LOC112937437 uncharacterized LOC107279602 uncharacterized LOC118474731 uncharacterized LOC118475796 uncharacterized LOC123418204 ribosomal protein S2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00052 Galactose metabolism 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00620 Pyruvate metabolism 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly00510 N-Glycan biosynthesis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 7
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 7
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 8
hvu03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 9
sbi03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107891001 107913328 821211 103855170 103859006 125609169 106438963 106418691 102627594 100812583 100264069 7493860 112422206 11414320 101263844 102586654 107819480 107807768 112937437 107279602 118474731 118475796 123418204 4306026
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