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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107891252   riboflavin synthase 
 ghi-r.1   107889498   riboflavin synthase 
 ath-u.5   AT2G20690   lumazine-binding family protein 
 bra-r.6   103828149   riboflavin synthase 
 bna-r.1   106357539   riboflavin synthase-like 
 bna-r.1   106380680   riboflavin synthase 
 cit-r.1   102620733   riboflavin synthase 
 gma-u.5   100809163   riboflavin synthase 
 vvi-u.5   100257400   riboflavin synthase 
 ppo-u.5   18108559   riboflavin synthase 
 ppo-u.5   18104638   riboflavin synthase 
 mtr-u.5   25484049   riboflavin synthase 
 mtr-u.5   25479437   riboflavin synthase 
 sly-u.5   101265745   riboflavin synthase 
 sot-r.1   102598979   riboflavin synthase 
 nta-r.1   107825203   riboflavin synthase 
 nta-r.1   107796682   riboflavin synthase 
 osa-u.5   4352436   riboflavin synthase 
 zma-u.5   100284485   riboflavin synthase alpha chain 
 zma-u.5   100282978   Riboflavin synthase alpha chain 
 tae-r.2   123110810   riboflavin synthase 
 tae-r.2   123119809   riboflavin synthase 
 tae-r.2   123102625   riboflavin synthase 
 hvu-r.1   123397747   riboflavin synthase 
 sbi-r.1   110429643   riboflavin synthase 
 bdi-r.1   100840951   riboflavin synthase 
 cre-r.1   CHLRE_06g296600v5   uncharacterized protein 

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Top 50 coexpressed genes to 107891252 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107891252 (ghi-r.1 coexpression data)

CoexMap"107891252"


ghiLOC107891252 | Entrez gene ID : 107891252    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 2 2 1 1 2 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00740 [list] [network] Riboflavin metabolism (45 genes)
ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)
GO BP
GO:0009231 [list] [network] riboflavin biosynthetic process  (20 genes)  IEA  
GO CC
GO MF
GO:0004746 [list] [network] riboflavin synthase activity  (2 genes)  IEA  
Protein XP_016671471.2 [sequence] [blastp]
XP_040956665.1 [sequence] [blastp]
XP_040956666.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_016671471.2)
chlo 5,  E.R. 3,  mito 1,  E.R._vacu 1,  E.R._plas 1,  cyto_E.R. 1  (predict for XP_040956665.1)
chlo 9  (predict for XP_040956666.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016671471.2)
chlo 9  (predict for XP_040956665.1)
chlo 9  (predict for XP_040956666.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107891252
ghi-r.1
for
107889498
ath-u.5
for
AT2G20690
bra-r.6
for
103828149
bna-r.1
for
106357539
bna-r.1
for
106380680
cit-r.1
for
102620733
gma-u.5
for
100809163
vvi-u.5
for
100257400
ppo-u.5
for
18108559
ppo-u.5
for
18104638
mtr-u.5
for
25484049
mtr-u.5
for
25479437
sly-u.5
for
101265745
sot-r.1
for
102598979
nta-r.1
for
107825203
nta-r.1
for
107796682
osa-u.5
for
4352436
zma-u.5
for
100284485
zma-u.5
for
100282978
tae-r.2
for
123110810
tae-r.2
for
123119809
tae-r.2
for
123102625
hvu-r.1
for
123397747
sbi-r.1
for
110429643
bdi-r.1
for
100840951
cre-r.1
for
CHLRE_06g296600v5


Ortholog ID: 8880
Species ghi ghi ath bra bna bna cit gma vvi ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107891252 LOC107889498 AT2G20690 LOC103828149 LOC106357539 LOC106380680 LOC102620733 LOC100809163 LOC100257400 LOC18108559 LOC18104638 LOC25484049 LOC25479437 LOC101265745 LOC102598979 LOC107825203 LOC107796682 LOC4352436 LOC100284485 LOC100282978 LOC123110810 LOC123119809 LOC123102625 LOC123397747 LOC110429643 LOC100840951 CHLRE_06g296600v5
Function* riboflavin synthase riboflavin synthase lumazine-binding family protein riboflavin synthase riboflavin synthase-like riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase alpha chain Riboflavin synthase alpha chain riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase riboflavin synthase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi01240 Biosynthesis of cofactors 4
ghi03250 Viral life cycle - HIV-1 2
ghi03272 Virion - Hepatitis viruses 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi01240 Biosynthesis of cofactors 4
ghi03250 Viral life cycle - HIV-1 2
ghi03272 Virion - Hepatitis viruses 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00660 C5-Branched dibasic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00660 C5-Branched dibasic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 3
gma01230 Biosynthesis of amino acids 3
gma01240 Biosynthesis of cofactors 3
gma00030 Pentose phosphate pathway 2
gma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 4
vvi03010 Ribosome 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 3
ppo00740 Riboflavin metabolism 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo01240 Biosynthesis of cofactors 4
ppo00740 Riboflavin metabolism 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 6
mtr01240 Biosynthesis of cofactors 6
mtr00790 Folate biosynthesis 2
mtr00940 Phenylpropanoid biosynthesis 2
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 4
sly01200 Carbon metabolism 4
sly00190 Oxidative phosphorylation 4
sly00020 Citrate cycle (TCA cycle) 3
sly00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 4
sot00740 Riboflavin metabolism 2
sot01230 Biosynthesis of amino acids 2
sot00061 Fatty acid biosynthesis 2
sot01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00740 Riboflavin metabolism 4
nta01240 Biosynthesis of cofactors 4
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00740 Riboflavin metabolism 4
nta01240 Biosynthesis of cofactors 4
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 4
osa00860 Porphyrin metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 5
zma04145 Phagosome 5
zma04075 Plant hormone signal transduction 4
zma01210 2-Oxocarboxylic acid metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
zma01240 Biosynthesis of cofactors 3
zma00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00740 Riboflavin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00740 Riboflavin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00740 Riboflavin metabolism 3
tae01240 Biosynthesis of cofactors 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 12
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107891252 107889498 816597 103828149 106357539 106380680 102620733 100809163 100257400 18108559 18104638 25484049 25479437 101265745 102598979 107825203 107796682 4352436 100284485 100282978 123110810 123119809 123102625 123397747 110429643 100840951 5717048
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