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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107892540   nuclear intron maturase 3, mitochondrial 
 ath-u.5   AT5G04050   RNA-directed DNA polymerase (reverse transcriptase) 
 gma-u.5   112999758   nuclear intron maturase 3, mitochondrial 
 gma-u.5   100812449   nuclear intron maturase 3, mitochondrial 
 vvi-u.5   100264128   nuclear intron maturase 3, mitochondrial 
 ppo-u.5   112327903   nuclear intron maturase 3, mitochondrial 
 mtr-u.5   112422855   nuclear intron maturase 3, mitochondrial 
 mtr-u.5   112421304   nuclear intron maturase 3, mitochondrial 
 sly-u.5   101246113   nuclear intron maturase 3, mitochondrial 
 zma-u.5   103629684   RNA-directed DNA polymerase (reverse transcriptase) 

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Top 50 coexpressed genes to 107892540 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107892540 (ghi-r.1 coexpression data)

CoexMap"107892540"


ghiLOC107892540 | Entrez gene ID : 107892540    
Species ghi ath gma vvi ppo mtr sly zma sot hvu tae cit sbi cre bna nta bdi bra osa
Paralog 1 1 2 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006315 [list] [network] homing of group II introns  (3 genes)  IEA  
GO:0090615 [list] [network] mitochondrial mRNA processing  (3 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (1525 genes)  IEA  
GO MF
GO:0003964 [list] [network] RNA-directed DNA polymerase activity  (3 genes)  IEA  
Protein XP_016673099.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  nucl 3,  chlo_mito 3  (predict for XP_016673099.2)
Subcellular
localization
TargetP
chlo 5  (predict for XP_016673099.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107892540

.
ath-u.5
for
AT5G04050

.
gma-u.5
for
112999758

.
gma-u.5
for
100812449

.
vvi-u.5
for
100264128

.
ppo-u.5
for
112327903

.
mtr-u.5
for
112422855

.
mtr-u.5
for
112421304

.
sly-u.5
for
101246113

.
zma-u.5
for
103629684

.


Ortholog ID: 10271
Species ath gma gma sly zma bra vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT5G04050 LOC112999758 LOC100812449 LOC101246113 LOC103629684 LOC103847334 LOC100264128 LOC112327903 LOC112421304 LOC112422855 LOC123159924 LOC123168959 LOC123412494 LOC123449772 LOC107892540 LOC107889395 LOC106372667 LOC106372516 LOC8069370 LOC102587557 LOC102607317 LOC100827431 LOC107766291 LOC107800159
Function* RNA-directed DNA polymerase (reverse transcriptase) nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial RNA-directed DNA polymerase (reverse transcriptase) nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial-like nuclear intron maturase 3, mitochondrial-like nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial-like nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial uncharacterized LOC8069370 uncharacterized LOC102587557 nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial nuclear intron maturase 3, mitochondrial-like nuclear intron maturase 3, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03440 Homologous recombination 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830284 112999758 100812449 101246113 103629684 103847334 100264128 112327903 112421304 112422855 123159924 123168959 123412494 123449772 107892540 107889395 106372667 106372516 8069370 102587557 102607317 100827431 107766291 107800159
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