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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107893229   TNF receptor-associated factor homolog 1b 
 ath-u.5   AT5G43560   TRAF-like superfamily protein 
 ath-u.5   AT1G04300   TRAF-like superfamily protein 
 gma-u.5   100784393   TNF receptor-associated factor homolog 1b 
 gma-u.5   100799509   TNF receptor-associated factor homolog 1b 
 gma-u.5   100818052   TNF receptor-associated factor homolog 1b 
 vvi-u.5   100247786   TNF receptor-associated factor homolog 1b 
 ppo-u.5   7473456   TNF receptor-associated factor homolog 1b 
 ppo-u.5   7474198   TNF receptor-associated factor homolog 1a 
 mtr-u.5   11434467   TNF receptor-associated factor homolog 1b 
 mtr-u.5   25484396   TNF receptor-associated factor homolog 1b 
 mtr-u.5   25484397   TNF receptor-associated factor homolog 1b 
 sly-u.5   101251685   MATH domain-containing protein 
 sly-u.5   101260404   TNF receptor-associated factor homolog 1b-like 
 sly-u.5   101267449   TNF receptor-associated factor homolog 1b-like 
 osa-u.5   9269535   TNF receptor-associated factor homolog 1a 
 osa-u.5   4339268   TNF receptor-associated factor homolog 1a 
 zma-u.5   103640538   TNF receptor-associated factor homolog 1a 
 zma-u.5   103645037   TNF receptor-associated factor homolog 1a 
 zma-u.5   103645681   uncharacterized LOC103645681 

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Top 50 coexpressed genes to 107893229 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107893229 (ghi-r.1 coexpression data)

CoexMap"107893229"


ghiLOC107893229 | Entrez gene ID : 107893229    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 3 1 2 3 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016673659.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016673659.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016673659.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107893229
ath-u.5
for
AT5G43560
ath-u.5
for
AT1G04300
gma-u.5
for
100784393
gma-u.5
for
100799509
gma-u.5
for
100818052
vvi-u.5
for
100247786
ppo-u.5
for
7473456
ppo-u.5
for
7474198
mtr-u.5
for
11434467
mtr-u.5
for
25484396
mtr-u.5
for
25484397
sly-u.5
for
101251685
sly-u.5
for
101260404
sly-u.5
for
101267449
osa-u.5
for
9269535
osa-u.5
for
4339268
zma-u.5
for
103640538
zma-u.5
for
103645037
zma-u.5
for
103645681


Ortholog ID: 1883
Species ghi ghi ath ath bra bra bna cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107929112 LOC107940179 AT5G43560 AT1G04300 LOC103843660 LOC103840147 LOC106405974 LOC102622804 LOC100784393 LOC100799509 LOC100247786 LOC7474198 LOC7473456 LOC25484396 LOC25484397 LOC101251685 LOC101260404 LOC102590534 LOC102590891 LOC107813933 LOC107811397 LOC9269535 LOC4339268 LOC100383243 LOC100381713 LOC123102329 LOC123110538 LOC123397892 LOC123447722 LOC8069743 LOC8069744 LOC100836292 LOC100846300 CHLRE_12g494000v5
Function* TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1b TRAF-like superfamily protein TRAF-like superfamily protein TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1b-like TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1b MATH domain-containing protein TNF receptor-associated factor homolog 1b-like MATH domain-containing protein At5g43560 MATH domain-containing protein At5g43560-like TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a uncharacterized LOC100383243 uncharacterized LOC100381713 TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a-like TNF receptor-associated factor homolog 1b-like MATH domain-containing protein At5g43560 MATH domain-containing protein At5g43560 TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107929112 107940179 834376 839551 103843660 103840147 106405974 102622804 100784393 100799509 100247786 7474198 7473456 25484396 25484397 101251685 101260404 102590534 102590891 107813933 107811397 9269535 4339268 100383243 100381713 123102329 123110538 123397892 123447722 8069743 8069744 100836292 100846300 5726084
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