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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G04300   TRAF-like superfamily protein 
 ath-r.7   AT1G04300   TRAF-like superfamily protein 
 ath-m.9   AT1G04300   TRAF-like superfamily protein 
 ath-e.2   AT1G04300   TRAF-like superfamily protein 
 ath-m.4.bio   AT1G04300   TRAF-like superfamily protein 
 ath-m.4.hor   AT1G04300   TRAF-like superfamily protein 
 ath-m.4.lig   AT1G04300   TRAF-like superfamily protein 
 ath-m.4.str   AT1G04300   TRAF-like superfamily protein 
 ath-m.4.tis   AT1G04300   TRAF-like superfamily protein 
 ath-u.5   AT5G43560   TRAF-like superfamily protein 
 gma-u.5   100820160   TNF receptor-associated factor homolog 1b 
 gma-u.5   100818052   TNF receptor-associated factor homolog 1b 
 gma-u.5   100799509   TNF receptor-associated factor homolog 1b 
 vvi-u.5   100247786   TNF receptor-associated factor homolog 1b 
 ppo-u.5   7473456   TNF receptor-associated factor homolog 1b 
 ppo-u.5   7474198   TNF receptor-associated factor homolog 1a 
 mtr-u.5   11434467   TNF receptor-associated factor homolog 1b 
 mtr-u.5   25484396   TNF receptor-associated factor homolog 1b 
 mtr-u.5   25484397   TNF receptor-associated factor homolog 1b 
 sly-u.5   101260404   TNF receptor-associated factor homolog 1b-like 
 sly-u.5   101267449   TNF receptor-associated factor homolog 1b-like 
 osa-u.5   4339268   TNF receptor-associated factor homolog 1a 
 osa-u.5   9269535   TNF receptor-associated factor homolog 1a 
 zma-u.5   103645037   TNF receptor-associated factor homolog 1a 
 zma-u.5   103640538   TNF receptor-associated factor homolog 1a 
 zma-u.5   103645681   uncharacterized LOC103645681 

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Top 50 coexpressed genes to AT1G04300 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G04300 (ath-u.5 coexpression data)

CoexMap"839551"


athAT1G04300 | Entrez gene ID : 839551      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 10 3 1 2 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1905037 [list] [network] autophagosome organization  (10 genes)  IMP  
GO:0045087 [list] [network] innate immune response  (157 genes)  IGI  
GO CC
GO:0005776 [list] [network] autophagosome  (26 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001077454.1 [sequence] [blastp]
NP_001077455.1 [sequence] [blastp]
NP_001184907.1 [sequence] [blastp]
NP_001321565.1 [sequence] [blastp]
NP_001321566.1 [sequence] [blastp]
NP_171926.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  vacu 4,  golg 1,  plas 1,  extr 1  (predict for NP_001077454.1)
nucl 10  (predict for NP_001077455.1)
nucl 10  (predict for NP_001184907.1)
nucl 10  (predict for NP_001321565.1)
nucl 5,  vacu 2,  chlo 1,  cyto 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001321566.1)
nucl 10  (predict for NP_171926.3)
Subcellular
localization
TargetP
scret 9  (predict for NP_001077454.1)
other 8  (predict for NP_001077455.1)
other 8  (predict for NP_001184907.1)
other 7  (predict for NP_001321565.1)
mito 6,  other 4  (predict for NP_001321566.1)
other 8  (predict for NP_171926.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G04300

.
ath-r.7
for
AT1G04300

.
ath-m.9
for
AT1G04300

.
ath-e.2
for
AT1G04300

.
ath-m.4.bio
for
AT1G04300

.
ath-m.4.hor
for
AT1G04300

.
ath-m.4.lig
for
AT1G04300

.
ath-m.4.str
for
AT1G04300

.
ath-m.4.tis
for
AT1G04300

.
ath-u.5
for
AT5G43560

.
gma-u.5
for
100820160

.
gma-u.5
for
100818052

.
gma-u.5
for
100799509

.
vvi-u.5
for
100247786

.
ppo-u.5
for
7473456

.
ppo-u.5
for
7474198

.
mtr-u.5
for
11434467

.
mtr-u.5
for
25484396

.
mtr-u.5
for
25484397

.
sly-u.5
for
101260404

.
sly-u.5
for
101267449

.
osa-u.5
for
4339268

.
osa-u.5
for
9269535

.
zma-u.5
for
103645037

.
zma-u.5
for
103640538

.
zma-u.5
for
103645681

.


Ortholog ID: 1883
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT5G43560 AT1G04300 LOC100784393 LOC100799509 LOC101251685 LOC101260404 LOC9269535 LOC4339268 LOC100383243 LOC100381713 LOC103843660 LOC103840147 LOC100247786 LOC7474198 LOC7473456 LOC25484396 LOC25484397 LOC123102329 LOC123110538 LOC123397892 LOC123447722 LOC107929112 LOC107940179 LOC106405974 CHLRE_12g494000v5 LOC8069743 LOC8069744 LOC102590534 LOC102590891 LOC102622804 LOC100836292 LOC100846300 LOC107813933 LOC107811397
Function* TRAF-like superfamily protein TRAF-like superfamily protein TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1b MATH domain-containing protein TNF receptor-associated factor homolog 1b-like TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a uncharacterized LOC100383243 uncharacterized LOC100381713 TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a-like TNF receptor-associated factor homolog 1b-like TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1b-like uncharacterized protein MATH domain-containing protein At5g43560 MATH domain-containing protein At5g43560 MATH domain-containing protein At5g43560 MATH domain-containing protein At5g43560-like TNF receptor-associated factor homolog 1b TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a TNF receptor-associated factor homolog 1a
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834376 839551 100784393 100799509 101251685 101260404 9269535 4339268 100383243 100381713 103843660 103840147 100247786 7474198 7473456 25484396 25484397 123102329 123110538 123397892 123447722 107929112 107940179 106405974 5726084 8069743 8069744 102590534 102590891 102622804 100836292 100846300 107813933 107811397
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