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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107897277   signal recognition particle 54 kDa protein 2 
 ghi-r.1   107914155   signal recognition particle 54 kDa protein 2 
 ath-u.5   AT5G49500   Signal recognition particle, SRP54 subunit protein 
 ath-u.5   ATHSRP54A   signal recognition particle 54 kDa subunit 
 ath-u.5   AT1G48900   Signal recognition particle, SRP54 subunit protein 
 bra-r.6   103871438   signal recognition particle 54 kDa protein 3 
 bra-r.6   103872323   signal recognition particle 54 kDa protein 3 
 bna-r.1   106437004   signal recognition particle 54 kDa protein 3-like 
 bna-r.1   106423769   signal recognition particle 54 kDa protein 3 
 bna-r.1   106346670   signal recognition particle 54 kDa protein 3 
 cit-r.1   102616618   signal recognition particle 54 kDa protein 2 
 gma-u.5   100811698   signal recognition particle 54 kDa protein 2 
 gma-u.5   100815799   signal recognition particle 54 kDa protein 2 
 gma-u.5   100792778   signal recognition particle 54 kDa protein 2 
 vvi-u.5   100261219   signal recognition particle subunit SRP54 2 
 ppo-u.5   7487461   signal recognition particle 54 kDa protein 2 
 ppo-u.5   7467986   signal recognition particle 54 kDa protein 2 
 mtr-u.5   11419634   signal recognition particle 54 kDa protein 2 
 mtr-u.5   11420996   signal recognition particle 54 kDa protein 2 
 sly-u.5   SRP54   signal recognition particle protein 3 
 sly-u.5   544156   54-kD signal recognition particle (SRP) specific protein 
 sot-r.1   102580277   signal recognition particle 54 kDa protein 2 
 sot-r.1   102604490   signal recognition particle 54 kDa protein 1 
 nta-r.1   107772766   signal recognition particle subunit SRP54 1 
 nta-r.1   107778901   signal recognition particle subunit SRP54 2 
 nta-r.1   107799251   signal recognition particle subunit SRP54 1 
 osa-u.5   4324712   signal recognition particle subunit SRP54 2 
 osa-u.5   4339274   signal recognition particle subunit SRP54 2 
 zma-u.5   100502496   Signal recognition particle 54 kDa protein 3 
 zma-u.5   100274376   uncharacterized LOC100274376 
 hvu-r.1   123447662   signal recognition particle 54 kDa protein 2-like 
 hvu-r.1   123424800   signal recognition particle 54 kDa protein 2 
 sbi-r.1   8067485   signal recognition particle 54 kDa protein 2 
 sbi-r.1   8072140   signal recognition particle 54 kDa protein 2 
 bdi-r.1   100838381   signal recognition particle 54 kDa protein 2 
 bdi-r.1   100844770   signal recognition particle 54 kDa protein 2 
 cre-r.1   CHLRE_13g569200v5   uncharacterized protein 

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Top 50 coexpressed genes to 107897277 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107897277 (ghi-r.1 coexpression data)

CoexMap"107897277"


ghiLOC107897277 | Entrez gene ID : 107897277    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma hvu sbi bdi cre tae
Paralog 2 3 2 3 1 3 1 2 2 2 2 3 2 2 2 2 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03060 [list] [network] Protein export (151 genes)
GO BP
GO:0006616 [list] [network] SRP-dependent cotranslational protein targeting to membrane, translocation  (27 genes)  IEA  
GO:0006614 [list] [network] SRP-dependent cotranslational protein targeting to membrane  (50 genes)  IEA  
GO CC
GO:0005786 [list] [network] signal recognition particle, endoplasmic reticulum targeting  (13 genes)  IEA  
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:0030942 [list] [network] endoplasmic reticulum signal peptide binding  (6 genes)  IEA  
GO:0008312 [list] [network] 7S RNA binding  (15 genes)  IEA  
GO:0003924 [list] [network] GTPase activity  (613 genes)  IEA  
GO:0005525 [list] [network] GTP binding  (687 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (974 genes)  IEA  
Protein XP_016678150.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1  (predict for XP_016678150.1)
Subcellular
localization
TargetP
other 5  (predict for XP_016678150.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107897277
ghi-r.1
for
107914155
ath-u.5
for
AT5G49500
ath-u.5
for
ATHSRP54A
ath-u.5
for
AT1G48900
bra-r.6
for
103871438
bra-r.6
for
103872323
bna-r.1
for
106437004
bna-r.1
for
106423769
bna-r.1
for
106346670
cit-r.1
for
102616618
gma-u.5
for
100811698
gma-u.5
for
100815799
gma-u.5
for
100792778
vvi-u.5
for
100261219
ppo-u.5
for
7487461
ppo-u.5
for
7467986
mtr-u.5
for
11419634
mtr-u.5
for
11420996
sly-u.5
for
SRP54
sly-u.5
for
544156
sot-r.1
for
102580277
sot-r.1
for
102604490
nta-r.1
for
107772766
nta-r.1
for
107778901
nta-r.1
for
107799251
osa-u.5
for
4324712
osa-u.5
for
4339274
zma-u.5
for
100502496
zma-u.5
for
100274376
hvu-r.1
for
123447662
hvu-r.1
for
123424800
sbi-r.1
for
8067485
sbi-r.1
for
8072140
bdi-r.1
for
100838381
bdi-r.1
for
100844770
cre-r.1
for
CHLRE_13g569200v5


Ortholog ID: 2674
Species ghi ghi ath ath ath bra bra bna bna bna cit gma gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma hvu hvu hvu sbi sbi bdi bdi cre
Symbol LOC107897277 LOC107914155 AT5G49500 ATHSRP54A AT1G48900 LOC103872323 LOC103832974 LOC106437004 LOC106382081 LOC125591442 LOC102616618 LOC100811698 LOC100815799 LOC100792778 LOC100261219 LOC7487461 LOC7467986 LOC11419634 LOC11420996 SRP54 LOC544156 LOC102580277 LOC102604490 LOC107772766 LOC107778901 LOC4324712 LOC4339274 LOC100502496 LOC100274376 LOC123447662 LOC123424800 LOC123447637 LOC8067485 LOC8072140 LOC100838381 LOC100844770 CHLRE_13g569200v5
Function* signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 Signal recognition particle, SRP54 subunit protein signal recognition particle 54 kDa subunit Signal recognition particle, SRP54 subunit protein signal recognition particle 54 kDa protein 3 signal recognition particle 54 kDa protein 3 signal recognition particle 54 kDa protein 3-like signal recognition particle 54 kDa protein 3 signal recognition particle 54 kDa protein 3-like signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle subunit SRP54 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle protein 3 54-kD signal recognition particle (SRP) specific protein signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 1 signal recognition particle subunit SRP54 1 signal recognition particle subunit SRP54 2 signal recognition particle subunit SRP54 2 signal recognition particle subunit SRP54 2 Signal recognition particle 54 kDa protein 3 uncharacterized LOC100274376 signal recognition particle 54 kDa protein 2-like signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 3 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 3
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 3
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03010 Ribosome 2
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 6
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 7
bna04146 Peroxisome 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 4
gma04144 Endocytosis 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma03060 Protein export 4
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 4
gma00513 Various types of N-glycan biosynthesis 2
gma04130 SNARE interactions in vesicular transport 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03060 Protein export 3
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03060 Protein export 3
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 6
nta04141 Protein processing in endoplasmic reticulum 2
nta04136 Autophagy - other 2
nta00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 6
nta00300 Lysine biosynthesis 3
nta00470 D-Amino acid metabolism 3
nta01230 Biosynthesis of amino acids 3
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 12
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00630 Glyoxylate and dicarboxylate metabolism 2
osa01200 Carbon metabolism 2
osa00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 7
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 6
zma03060 Protein export 3
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu04144 Endocytosis 3
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 5
hvu03050 Proteasome 3
hvu03060 Protein export 2
hvu04145 Phagosome 2
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi00053 Ascorbate and aldarate metabolism 2
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01240 Biosynthesis of cofactors 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 4
bdi04130 SNARE interactions in vesicular transport 3
bdi04145 Phagosome 2
bdi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107897277 107914155 835010 838100 841312 103872323 103832974 106437004 106382081 125591442 102616618 100811698 100815799 100792778 100261219 7487461 7467986 11419634 11420996 101248563 544156 102580277 102604490 107772766 107778901 4324712 4339274 100502496 100274376 123447662 123424800 123447637 8067485 8072140 100838381 100844770 5719106
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