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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7487461   signal recognition particle 54 kDa protein 2 
 ppo-r.4   7487461   signal recognition particle 54 kDa protein 2 
 ppo-m.4   7487461   signal recognition particle 54 kDa protein 2 
 ppo-u.5   7467986   signal recognition particle 54 kDa protein 2 
 gma-u.5   100811698   signal recognition particle 54 kDa protein 2 
 gma-u.5   100792778   signal recognition particle 54 kDa protein 2 
 gma-u.5   100789217   signal recognition particle 54 kDa protein 2 
 mtr-u.5   11419634   signal recognition particle 54 kDa protein 2 
 mtr-u.5   11420996   signal recognition particle 54 kDa protein 2 
 ath-u.5   AT5G49500   Signal recognition particle, SRP54 subunit protein 
 ath-u.5   ATHSRP54A   signal recognition particle 54 kDa subunit 
 ath-u.5   AT1G48900   Signal recognition particle, SRP54 subunit protein 
 vvi-u.5   100261219   signal recognition particle subunit SRP54 2 
 sly-u.5   SRP54   signal recognition particle protein 3 
 sly-u.5   544156   54-kD signal recognition particle (SRP) specific protein 
 osa-u.5   4339274   signal recognition particle subunit SRP54 2 
 osa-u.5   4324712   signal recognition particle subunit SRP54 2 
 zma-u.5   100502496   Signal recognition particle 54 kDa protein 3 
 zma-u.5   100274376   uncharacterized LOC100274376 

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Top 50 coexpressed genes to 7487461 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7487461 (ppo-u.5 coexpression data)

CoexMap"7487461"


ppoLOC7487461 | Entrez gene ID : 7487461    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 2 3 1 2 2 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03060 [list] [network] Protein export (78 genes)
GO BP
GO:0006616 [list] [network] SRP-dependent cotranslational protein targeting to membrane, translocation  (9 genes)  IEA  
GO:0006614 [list] [network] SRP-dependent cotranslational protein targeting to membrane  (25 genes)  IEA  
GO CC
GO:0005786 [list] [network] signal recognition particle, endoplasmic reticulum targeting  (10 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1141 genes)  IEA  
GO MF
GO:0030942 [list] [network] endoplasmic reticulum signal peptide binding  (5 genes)  IEA  
GO:0008312 [list] [network] 7S RNA binding  (12 genes)  IEA  
GO:0003924 [list] [network] GTPase activity  (264 genes)  IEA  
GO:0005525 [list] [network] GTP binding  (290 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (550 genes)  IEA  
Protein XP_052304027.1 [sequence] [blastp]
XP_052304028.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1,  nucl 1  (predict for XP_052304027.1)
nucl 5,  cyto 3,  nucl_plas 3  (predict for XP_052304028.1)
Subcellular
localization
TargetP
other 7  (predict for XP_052304027.1)
other 8  (predict for XP_052304028.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7487461

.
ppo-r.4
for
7487461

.
ppo-m.4
for
7487461

.
ppo-u.5
for
7467986

.
gma-u.5
for
100811698

.
gma-u.5
for
100792778

.
gma-u.5
for
100789217

.
mtr-u.5
for
11419634

.
mtr-u.5
for
11420996

.
ath-u.5
for
AT5G49500

.
ath-u.5
for
ATHSRP54A

.
ath-u.5
for
AT1G48900

.
vvi-u.5
for
100261219

.
sly-u.5
for
SRP54

.
sly-u.5
for
544156

.
osa-u.5
for
4339274

.
osa-u.5
for
4324712

.
zma-u.5
for
100502496

.
zma-u.5
for
100274376

.


Ortholog ID: 2674
Species ath ath gma gma sly sly osa osa zma zma bra vvi ppo ppo mtr mtr hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT1G48900 AT5G49500 LOC100811698 LOC100815799 SRP54 LOC544156 LOC4339274 LOC4324712 LOC100274376 LOC100502496 LOC103872323 LOC100261219 LOC7467986 LOC7487461 LOC11420996 LOC11419634 LOC123424800 LOC123447637 LOC107914155 LOC107897277 LOC106382081 LOC106437004 CHLRE_13g569200v5 LOC8067485 LOC8072140 LOC102580277 LOC102604490 LOC102616618 LOC100844770 LOC100838381 LOC107778901 LOC107772766
Function* Signal recognition particle, SRP54 subunit protein Signal recognition particle, SRP54 subunit protein signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle protein 3 54-kD signal recognition particle (SRP) specific protein signal recognition particle subunit SRP54 2 signal recognition particle subunit SRP54 2 uncharacterized LOC100274376 Signal recognition particle 54 kDa protein 3 signal recognition particle 54 kDa protein 3 signal recognition particle subunit SRP54 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 3 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 3 signal recognition particle 54 kDa protein 3-like uncharacterized protein signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 1 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle 54 kDa protein 2 signal recognition particle subunit SRP54 2 signal recognition particle subunit SRP54 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 6
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 4
gma04144 Endocytosis 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma03060 Protein export 4
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00630 Glyoxylate and dicarboxylate metabolism 2
osa01200 Carbon metabolism 2
osa00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 12
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 6
zma03060 Protein export 3
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 7
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03060 Protein export 3
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03060 Protein export 3
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 5
hvu03050 Proteasome 3
hvu03060 Protein export 2
hvu04145 Phagosome 2
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 3
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 3
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 7
bna04146 Peroxisome 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi00053 Ascorbate and aldarate metabolism 2
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01240 Biosynthesis of cofactors 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 4
bdi04130 SNARE interactions in vesicular transport 3
bdi04145 Phagosome 2
bdi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 6
nta00300 Lysine biosynthesis 3
nta00470 D-Amino acid metabolism 3
nta01230 Biosynthesis of amino acids 3
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 6
nta04141 Protein processing in endoplasmic reticulum 2
nta04136 Autophagy - other 2
nta00591 Linoleic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841312 835010 100811698 100815799 101248563 544156 4339274 4324712 100274376 100502496 103872323 100261219 7467986 7487461 11420996 11419634 123424800 123447637 107914155 107897277 106382081 106437004 5719106 8067485 8072140 102580277 102604490 102616618 100844770 100838381 107778901 107772766
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