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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107897428   threonine synthase, chloroplastic 
 ghi-r.1   107907118   threonine synthase 1, chloroplastic 
 ghi-r.1   107916403   threonine synthase, chloroplastic 
 ghi-r.1   107901092   threonine synthase 1, chloroplastic 
 ath-u.5   MTO2   Pyridoxal-5'-phosphate-dependent enzyme family protein 
 ath-u.5   AT1G72810   Pyridoxal-5'-phosphate-dependent enzyme family protein 
 bra-r.6   103837956   threonine synthase 1, chloroplastic 
 bra-r.6   103853266   threonine synthase 1, chloroplastic 
 bra-r.6   103834704   threonine synthase 1, chloroplastic 
 bna-r.1   106388466   threonine synthase 1, chloroplastic 
 bna-r.1   106381286   threonine synthase 2, chloroplastic 
 bna-r.1   106375529   threonine synthase 1, chloroplastic-like 
 cit-r.1   102614479   threonine synthase, chloroplastic-like 
 cit-r.1   102628627   threonine synthase 1, chloroplastic 
 gma-u.5   100813292   threonine synthase, chloroplastic 
 gma-u.5   100788585   threonine synthase 1, chloroplastic 
 gma-u.5   100805303   threonine synthase, chloroplastic 
 vvi-u.5   100266217   threonine synthase, chloroplastic 
 vvi-u.5   100257746   threonine synthase, chloroplastic 
 ppo-u.5   18094846   threonine synthase, chloroplastic 
 ppo-u.5   18096715   threonine synthase, chloroplastic 
 mtr-u.5   11423271   threonine synthase, chloroplastic 
 mtr-u.5   25494197   threonine synthase, chloroplastic 
 sly-u.5   101260521   threonine synthase, chloroplastic 
 sly-u.5   101244777   threonine synthase, chloroplastic-like 
 sot-r.1   TS   threonine synthase 
 sot-r.1   102591826   threonine synthase, chloroplastic-like 
 nta-r.1   107818452   threonine synthase, chloroplastic-like 
 nta-r.1   107803812   threonine synthase, chloroplastic 
 nta-r.1   107785910   threonine synthase, chloroplastic 
 osa-u.5   4339521   threonine synthase, chloroplastic 
 osa-u.5   4325651   threonine synthase, chloroplastic 
 zma-u.5   103646801   threonine synthase, chloroplastic 
 zma-u.5   103630689   threonine synthase, chloroplastic-like 
 zma-u.5   100283397   threonine synthase 
 tae-r.2   123070503   threonine synthase, chloroplastic 
 tae-r.2   123061812   threonine synthase, chloroplastic 
 tae-r.2   123078914   threonine synthase, chloroplastic 
 hvu-r.1   123444170   threonine synthase, chloroplastic-like 
 hvu-r.1   123449081   threonine synthase, chloroplastic-like 
 sbi-r.1   8063100   threonine synthase, chloroplastic 
 sbi-r.1   8061103   threonine synthase, chloroplastic 
 bdi-r.1   100826132   threonine synthase, chloroplastic 
 bdi-r.1   100839814   threonine synthase, chloroplastic 
 cre-r.1   CHLRE_10g451900v5   uncharacterized protein 

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Top 50 coexpressed genes to 107897428 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107897428 (ghi-r.1 coexpression data)

CoexMap"107897428"


ghiLOC107897428 | Entrez gene ID : 107897428    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 2 3 2 2 2 2 2 3 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00260 [list] [network] Glycine, serine and threonine metabolism (150 genes)
ghi00750 [list] [network] Vitamin B6 metabolism (39 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0019344 [list] [network] cysteine biosynthetic process  (31 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004795 [list] [network] threonine synthase activity  (5 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (218 genes)  IEA  
Protein XP_016678367.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 2,  nucl 1,  mito 1  (predict for XP_016678367.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016678367.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107897428
ghi-r.1
for
107907118
ghi-r.1
for
107916403
ghi-r.1
for
107901092
ath-u.5
for
MTO2
ath-u.5
for
AT1G72810
bra-r.6
for
103837956
bra-r.6
for
103853266
bra-r.6
for
103834704
bna-r.1
for
106388466
bna-r.1
for
106381286
bna-r.1
for
106375529
cit-r.1
for
102614479
cit-r.1
for
102628627
gma-u.5
for
100813292
gma-u.5
for
100788585
gma-u.5
for
100805303
vvi-u.5
for
100266217
vvi-u.5
for
100257746
ppo-u.5
for
18094846
ppo-u.5
for
18096715
mtr-u.5
for
11423271
mtr-u.5
for
25494197
sly-u.5
for
101260521
sly-u.5
for
101244777
sot-r.1
for
TS
sot-r.1
for
102591826
nta-r.1
for
107818452
nta-r.1
for
107803812
nta-r.1
for
107785910
osa-u.5
for
4339521
osa-u.5
for
4325651
zma-u.5
for
103646801
zma-u.5
for
103630689
zma-u.5
for
100283397
tae-r.2
for
123070503
tae-r.2
for
123061812
tae-r.2
for
123078914
hvu-r.1
for
123444170
hvu-r.1
for
123449081
sbi-r.1
for
8063100
sbi-r.1
for
8061103
bdi-r.1
for
100826132
bdi-r.1
for
100839814
cre-r.1
for
CHLRE_10g451900v5


Ortholog ID: 2666
Species ghi ghi ghi ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107897428 LOC107907118 LOC107916403 MTO2 AT1G72810 LOC103837956 LOC103834704 LOC103852803 LOC106436352 LOC106361160 LOC106390072 LOC102614479 LOC102628627 LOC100813292 LOC100788585 LOC100805303 LOC100266217 LOC100257746 LOC18094846 LOC18096715 LOC11423271 LOC25494197 LOC101260521 LOC101244777 TS LOC102591826 LOC107771544 LOC107767400 LOC107798068 LOC4339521 LOC4325651 LOC103646801 LOC103630689 LOC100283397 LOC123070503 LOC123078914 LOC123066121 LOC123444170 LOC123449081 LOC8063100 LOC8061103 LOC100826132 LOC100839814 CHLRE_10g451900v5
Function* threonine synthase, chloroplastic threonine synthase 1, chloroplastic threonine synthase, chloroplastic Pyridoxal-5'-phosphate-dependent enzyme family protein Pyridoxal-5'-phosphate-dependent enzyme family protein threonine synthase 1, chloroplastic threonine synthase 1, chloroplastic threonine synthase 2, chloroplastic threonine synthase 1, chloroplastic-like threonine synthase 1, chloroplastic-like threonine synthase 1, chloroplastic-like threonine synthase, chloroplastic-like threonine synthase 1, chloroplastic threonine synthase, chloroplastic threonine synthase 1, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic-like threonine synthase threonine synthase, chloroplastic-like threonine synthase, chloroplastic-like threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic-like threonine synthase threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic-like threonine synthase, chloroplastic-like threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00750 Vitamin B6 metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 7
ghi01230 Biosynthesis of amino acids 7
ghi00750 Vitamin B6 metabolism 5
ghi00010 Glycolysis / Gluconeogenesis 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00260 Glycine, serine and threonine metabolism 5
ghi00750 Vitamin B6 metabolism 5
ghi00220 Arginine biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
ath00260 Glycine, serine and threonine metabolism 2
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00966 Glucosinolate biosynthesis 8
ath01210 2-Oxocarboxylic acid metabolism 6
ath01230 Biosynthesis of amino acids 5
ath00290 Valine, leucine and isoleucine biosynthesis 4
ath00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
bra04146 Peroxisome 3
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 4
bra00260 Glycine, serine and threonine metabolism 3
bra01210 2-Oxocarboxylic acid metabolism 2
bra00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00966 Glucosinolate biosynthesis 2
bra01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 8
bna00260 Glycine, serine and threonine metabolism 6
bna00750 Vitamin B6 metabolism 6
bna00230 Purine metabolism 4
bna00250 Alanine, aspartate and glutamate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 8
bna00260 Glycine, serine and threonine metabolism 6
bna00750 Vitamin B6 metabolism 6
bna00230 Purine metabolism 4
bna00250 Alanine, aspartate and glutamate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 8
bna00260 Glycine, serine and threonine metabolism 6
bna00750 Vitamin B6 metabolism 6
bna00230 Purine metabolism 4
bna00250 Alanine, aspartate and glutamate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 6
cit01200 Carbon metabolism 3
cit01240 Biosynthesis of cofactors 3
cit00010 Glycolysis / Gluconeogenesis 2
cit00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit00290 Valine, leucine and isoleucine biosynthesis 3
cit00770 Pantothenate and CoA biosynthesis 3
cit01210 2-Oxocarboxylic acid metabolism 3
cit00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 8
gma00010 Glycolysis / Gluconeogenesis 7
gma00620 Pyruvate metabolism 7
gma01230 Biosynthesis of amino acids 6
gma00061 Fatty acid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 7
gma01210 2-Oxocarboxylic acid metabolism 6
gma00290 Valine, leucine and isoleucine biosynthesis 4
gma00660 C5-Branched dibasic acid metabolism 4
gma00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma00270 Cysteine and methionine metabolism 3
gma00260 Glycine, serine and threonine metabolism 2
gma00750 Vitamin B6 metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 4
vvi00290 Valine, leucine and isoleucine biosynthesis 2
vvi00770 Pantothenate and CoA biosynthesis 2
vvi01210 2-Oxocarboxylic acid metabolism 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi01250 Biosynthesis of nucleotide sugars 3
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01230 Biosynthesis of amino acids 2
vvi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00270 Cysteine and methionine metabolism 4
ppo01230 Biosynthesis of amino acids 4
ppo01240 Biosynthesis of cofactors 3
ppo00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo01240 Biosynthesis of cofactors 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr01240 Biosynthesis of cofactors 3
mtr01230 Biosynthesis of amino acids 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00592 alpha-Linolenic acid metabolism 3
mtr00500 Starch and sucrose metabolism 3
mtr00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 6
sly00061 Fatty acid biosynthesis 3
sly01212 Fatty acid metabolism 3
sly00260 Glycine, serine and threonine metabolism 3
sly00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00061 Fatty acid biosynthesis 6
sly01212 Fatty acid metabolism 6
sly01240 Biosynthesis of cofactors 5
sly01230 Biosynthesis of amino acids 5
sly00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00260 Glycine, serine and threonine metabolism 3
sot00190 Oxidative phosphorylation 2
sot00750 Vitamin B6 metabolism 2
sot00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 14
sot01210 2-Oxocarboxylic acid metabolism 6
sot01200 Carbon metabolism 6
sot00290 Valine, leucine and isoleucine biosynthesis 5
sot00770 Pantothenate and CoA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 3
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 8
nta00270 Cysteine and methionine metabolism 4
nta00260 Glycine, serine and threonine metabolism 3
nta00290 Valine, leucine and isoleucine biosynthesis 3
nta01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00260 Glycine, serine and threonine metabolism 6
nta00010 Glycolysis / Gluconeogenesis 4
nta00020 Citrate cycle (TCA cycle) 4
nta00280 Valine, leucine and isoleucine degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa01230 Biosynthesis of amino acids 5
osa00250 Alanine, aspartate and glutamate metabolism 3
osa00220 Arginine biosynthesis 2
osa00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 10
osa01210 2-Oxocarboxylic acid metabolism 5
osa00260 Glycine, serine and threonine metabolism 3
osa00290 Valine, leucine and isoleucine biosynthesis 3
osa00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma00190 Oxidative phosphorylation 3
zma03060 Protein export 3
zma00260 Glycine, serine and threonine metabolism 3
zma00750 Vitamin B6 metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma00190 Oxidative phosphorylation 3
zma00260 Glycine, serine and threonine metabolism 3
zma00750 Vitamin B6 metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 6
zma00710 Carbon fixation by Calvin cycle 6
zma01200 Carbon metabolism 6
zma00030 Pentose phosphate pathway 3
zma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00260 Glycine, serine and threonine metabolism 6
tae00750 Vitamin B6 metabolism 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 10
tae00260 Glycine, serine and threonine metabolism 6
tae00750 Vitamin B6 metabolism 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 11
tae00260 Glycine, serine and threonine metabolism 10
tae00750 Vitamin B6 metabolism 6
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu00260 Glycine, serine and threonine metabolism 2
hvu00270 Cysteine and methionine metabolism 2
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu00270 Cysteine and methionine metabolism 2
hvu01200 Carbon metabolism 2
hvu00260 Glycine, serine and threonine metabolism 2
hvu00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 6
sbi04075 Plant hormone signal transduction 3
sbi00260 Glycine, serine and threonine metabolism 3
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sbi00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi00260 Glycine, serine and threonine metabolism 3
sbi01230 Biosynthesis of amino acids 3
sbi03010 Ribosome 2
sbi00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi01230 Biosynthesis of amino acids 3
bdi03040 Spliceosome 2
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107897428 107907118 107916403 829106 843612 103837956 103834704 103852803 106436352 106361160 106390072 102614479 102628627 100813292 100788585 100805303 100266217 100257746 18094846 18096715 11423271 25494197 101260521 101244777 102577745 102591826 107771544 107767400 107798068 4339521 4325651 103646801 103630689 100283397 123070503 123078914 123066121 123444170 123449081 8063100 8061103 100826132 100839814 5724069
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