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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107907118   threonine synthase 1, chloroplastic 
 ath-u.5   MTO2   Pyridoxal-5'-phosphate-dependent enzyme family protein 
 ath-u.5   AT1G72810   Pyridoxal-5'-phosphate-dependent enzyme family protein 
 gma-u.5   100813292   threonine synthase, chloroplastic 
 gma-u.5   100788585   threonine synthase 1, chloroplastic 
 gma-u.5   100805303   threonine synthase, chloroplastic 
 vvi-u.5   100266217   threonine synthase, chloroplastic 
 vvi-u.5   100257746   threonine synthase, chloroplastic 
 ppo-u.5   18094846   threonine synthase, chloroplastic 
 ppo-u.5   18096715   threonine synthase, chloroplastic 
 mtr-u.5   11423271   threonine synthase, chloroplastic 
 mtr-u.5   25494197   threonine synthase, chloroplastic 
 sly-u.5   101260521   threonine synthase, chloroplastic 
 sly-u.5   101244777   threonine synthase, chloroplastic-like 
 osa-u.5   4339521   threonine synthase, chloroplastic 
 osa-u.5   4325651   threonine synthase, chloroplastic 
 zma-u.5   103646801   threonine synthase, chloroplastic 
 zma-u.5   103630689   threonine synthase, chloroplastic-like 
 zma-u.5   100283397   threonine synthase 

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Top 50 coexpressed genes to 107907118 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107907118 (ghi-r.1 coexpression data)

CoexMap"107907118"


ghiLOC107907118 | Entrez gene ID : 107907118    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 3 2 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00260 [list] [network] Glycine, serine and threonine metabolism (150 genes)
ghi00750 [list] [network] Vitamin B6 metabolism (39 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0019344 [list] [network] cysteine biosynthetic process  (31 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004795 [list] [network] threonine synthase activity  (5 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (218 genes)  IEA  
Protein XP_016689840.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_016689840.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016689840.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107907118
ath-u.5
for
MTO2
ath-u.5
for
AT1G72810
gma-u.5
for
100813292
gma-u.5
for
100788585
gma-u.5
for
100805303
vvi-u.5
for
100266217
vvi-u.5
for
100257746
ppo-u.5
for
18094846
ppo-u.5
for
18096715
mtr-u.5
for
11423271
mtr-u.5
for
25494197
sly-u.5
for
101260521
sly-u.5
for
101244777
osa-u.5
for
4339521
osa-u.5
for
4325651
zma-u.5
for
103646801
zma-u.5
for
103630689
zma-u.5
for
100283397


Ortholog ID: 2666
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107907118 LOC107897428 AT1G72810 MTO2 LOC103852803 LOC103837956 LOC106436352 LOC106390072 LOC102628627 LOC102614479 LOC100788585 LOC100805303 LOC100257746 LOC100266217 LOC18096715 LOC18094846 LOC11423271 LOC25494197 LOC101244777 LOC101260521 TS LOC102591826 LOC107798068 LOC107767400 LOC4325651 LOC4339521 LOC100283397 LOC103646801 LOC123078914 LOC123066121 LOC123444170 LOC123449081 LOC8063100 LOC8061103 LOC100826132 LOC100839814 CHLRE_10g451900v5
Function* threonine synthase 1, chloroplastic threonine synthase, chloroplastic Pyridoxal-5'-phosphate-dependent enzyme family protein Pyridoxal-5'-phosphate-dependent enzyme family protein threonine synthase 2, chloroplastic threonine synthase 1, chloroplastic threonine synthase 1, chloroplastic-like threonine synthase 1, chloroplastic-like threonine synthase 1, chloroplastic threonine synthase, chloroplastic-like threonine synthase 1, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic-like threonine synthase, chloroplastic threonine synthase threonine synthase, chloroplastic-like threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic-like threonine synthase, chloroplastic-like threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic threonine synthase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 7
ghi01230 Biosynthesis of amino acids 7
ghi00750 Vitamin B6 metabolism 5
ghi00010 Glycolysis / Gluconeogenesis 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00750 Vitamin B6 metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00966 Glucosinolate biosynthesis 8
ath01210 2-Oxocarboxylic acid metabolism 6
ath01230 Biosynthesis of amino acids 5
ath00290 Valine, leucine and isoleucine biosynthesis 4
ath00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
ath00260 Glycine, serine and threonine metabolism 2
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00966 Glucosinolate biosynthesis 2
bra01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
bra04146 Peroxisome 3
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 8
bna00260 Glycine, serine and threonine metabolism 6
bna00750 Vitamin B6 metabolism 6
bna00230 Purine metabolism 4
bna00250 Alanine, aspartate and glutamate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 8
bna00260 Glycine, serine and threonine metabolism 6
bna00750 Vitamin B6 metabolism 6
bna00230 Purine metabolism 4
bna00250 Alanine, aspartate and glutamate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit00290 Valine, leucine and isoleucine biosynthesis 3
cit00770 Pantothenate and CoA biosynthesis 3
cit01210 2-Oxocarboxylic acid metabolism 3
cit00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 6
cit01200 Carbon metabolism 3
cit01240 Biosynthesis of cofactors 3
cit00010 Glycolysis / Gluconeogenesis 2
cit00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 7
gma01210 2-Oxocarboxylic acid metabolism 6
gma00290 Valine, leucine and isoleucine biosynthesis 4
gma00660 C5-Branched dibasic acid metabolism 4
gma00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma00270 Cysteine and methionine metabolism 3
gma00260 Glycine, serine and threonine metabolism 2
gma00750 Vitamin B6 metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi01250 Biosynthesis of nucleotide sugars 3
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01230 Biosynthesis of amino acids 2
vvi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 4
vvi00290 Valine, leucine and isoleucine biosynthesis 2
vvi00770 Pantothenate and CoA biosynthesis 2
vvi01210 2-Oxocarboxylic acid metabolism 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo01240 Biosynthesis of cofactors 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00270 Cysteine and methionine metabolism 4
ppo01230 Biosynthesis of amino acids 4
ppo01240 Biosynthesis of cofactors 3
ppo00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr01240 Biosynthesis of cofactors 3
mtr01230 Biosynthesis of amino acids 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00592 alpha-Linolenic acid metabolism 3
mtr00500 Starch and sucrose metabolism 3
mtr00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00061 Fatty acid biosynthesis 6
sly01212 Fatty acid metabolism 6
sly01240 Biosynthesis of cofactors 5
sly01230 Biosynthesis of amino acids 5
sly00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 6
sly00061 Fatty acid biosynthesis 3
sly01212 Fatty acid metabolism 3
sly00260 Glycine, serine and threonine metabolism 3
sly00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00260 Glycine, serine and threonine metabolism 3
sot00190 Oxidative phosphorylation 2
sot00750 Vitamin B6 metabolism 2
sot00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 14
sot01210 2-Oxocarboxylic acid metabolism 6
sot01200 Carbon metabolism 6
sot00290 Valine, leucine and isoleucine biosynthesis 5
sot00770 Pantothenate and CoA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00260 Glycine, serine and threonine metabolism 6
nta00010 Glycolysis / Gluconeogenesis 4
nta00020 Citrate cycle (TCA cycle) 4
nta00280 Valine, leucine and isoleucine degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 8
nta00270 Cysteine and methionine metabolism 4
nta00260 Glycine, serine and threonine metabolism 3
nta00290 Valine, leucine and isoleucine biosynthesis 3
nta01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 10
osa01210 2-Oxocarboxylic acid metabolism 5
osa00260 Glycine, serine and threonine metabolism 3
osa00290 Valine, leucine and isoleucine biosynthesis 3
osa00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa01230 Biosynthesis of amino acids 5
osa00250 Alanine, aspartate and glutamate metabolism 3
osa00220 Arginine biosynthesis 2
osa00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 6
zma00710 Carbon fixation by Calvin cycle 6
zma01200 Carbon metabolism 6
zma00030 Pentose phosphate pathway 3
zma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma00190 Oxidative phosphorylation 3
zma03060 Protein export 3
zma00260 Glycine, serine and threonine metabolism 3
zma00750 Vitamin B6 metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 10
tae00260 Glycine, serine and threonine metabolism 6
tae00750 Vitamin B6 metabolism 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 11
tae00260 Glycine, serine and threonine metabolism 10
tae00750 Vitamin B6 metabolism 6
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu00260 Glycine, serine and threonine metabolism 2
hvu00270 Cysteine and methionine metabolism 2
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu00270 Cysteine and methionine metabolism 2
hvu01200 Carbon metabolism 2
hvu00260 Glycine, serine and threonine metabolism 2
hvu00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 6
sbi04075 Plant hormone signal transduction 3
sbi00260 Glycine, serine and threonine metabolism 3
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sbi00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi00260 Glycine, serine and threonine metabolism 3
sbi01230 Biosynthesis of amino acids 3
sbi03010 Ribosome 2
sbi00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi01230 Biosynthesis of amino acids 3
bdi03040 Spliceosome 2
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107907118 107897428 843612 829106 103852803 103837956 106436352 106390072 102628627 102614479 100788585 100805303 100257746 100266217 18096715 18094846 11423271 25494197 101244777 101260521 102577745 102591826 107798068 107767400 4325651 4339521 100283397 103646801 123078914 123066121 123444170 123449081 8063100 8061103 100826132 100839814 5724069
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