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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107898495   transcription factor SCREAM2 
 ghi-r.1   107933782   uncharacterized LOC107933782 
 ghi-r.1   107906144   transcription factor SCREAM2 
 ath-u.5   AT2G40435   transcription factor SCREAM-like protein 
 ath-u.5   AT3G56220   transcription regulator 
 bra-r.6   103866502   transcription factor bHLH61 
 cit-r.1   102616900   uncharacterized LOC102616900 
 gma-u.5   100814138   uncharacterized LOC100814138 
 gma-u.5   100809200   uncharacterized LOC100809200 
 vvi-u.5   100245026   uncharacterized LOC100245026 
 vvi-u.5   100241403   uncharacterized LOC100241403 
 ppo-u.5   7458829   uncharacterized LOC7458829 
 ppo-u.5   7460428   transcription factor SCREAM2 
 mtr-u.5   11434084   uncharacterized LOC11434084 
 mtr-u.5   11442077   uncharacterized LOC11442077 
 sly-u.5   101268000   transcription factor bHLH61 
 sot-r.1   102583721   transcription factor SCREAM2-like 
 sot-r.1   102600920   transcription factor bHLH61-like 
 nta-r.1   107772985   transcription factor SCREAM2-like 
 nta-r.1   107785356   transcription factor bHLH61-like 
 nta-r.1   107812080   uncharacterized LOC107812080 
 osa-u.5   4332778   transcription factor SCREAM2 
 osa-u.5   4338459   transcription factor SCREAM2 
 osa-u.5   4349582   transcription factor bHLH61 
 zma-u.5   100274843   uncharacterized LOC100274843 
 sbi-r.1   8082324   uncharacterized LOC8082324 
 bdi-r.1   100836923   uncharacterized LOC100836923 

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Top 50 coexpressed genes to 107898495 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107898495 (ghi-r.1 coexpression data)

CoexMap"107898495"


ghiLOC107898495 | Entrez gene ID : 107898495    
Species ghi ath bra cit gma vvi ppo mtr sly sot nta osa zma sbi bdi bna hvu tae cre
Paralog 3 2 1 1 2 2 2 2 1 2 3 3 1 1 1 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
GO:0043565 [list] [network] sequence-specific DNA binding  (1947 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein XP_016679449.1 [sequence] [blastp]
XP_016679450.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  nucl_plas 2,  plas 1  (predict for XP_016679449.1)
cyto 6,  nucl 2,  nucl_plas 2,  plas 1  (predict for XP_016679450.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for XP_016679449.1)
mito 5,  other 3  (predict for XP_016679450.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107898495
ghi-r.1
for
107933782
ghi-r.1
for
107906144
ath-u.5
for
AT2G40435
ath-u.5
for
AT3G56220
bra-r.6
for
103866502
cit-r.1
for
102616900
gma-u.5
for
100814138
gma-u.5
for
100809200
vvi-u.5
for
100245026
vvi-u.5
for
100241403
ppo-u.5
for
7458829
ppo-u.5
for
7460428
mtr-u.5
for
11434084
mtr-u.5
for
11442077
sly-u.5
for
101268000
sot-r.1
for
102583721
sot-r.1
for
102600920
nta-r.1
for
107772985
nta-r.1
for
107785356
nta-r.1
for
107812080
osa-u.5
for
4332778
osa-u.5
for
4338459
osa-u.5
for
4349582
zma-u.5
for
100274843
sbi-r.1
for
8082324
bdi-r.1
for
100836923


Ortholog ID: 1143
Species ghi ghi ath ath bra bra bra bna bna cit gma gma vvi vvi ppo ppo ppo mtr mtr sly sot sot nta nta nta osa osa osa zma sbi bdi
Symbol LOC107933782 LOC107906144 AT2G40435 AT3G56220 LOC103866502 LOC103830041 LOC103863111 LOC106356736 LOC106450698 LOC102616900 LOC100814138 LOC100305696 LOC100245026 LOC100241403 LOC7458829 LOC7460428 LOC7487355 LOC11434084 LOC11442077 LOC101268000 LOC102583721 LOC102600920 LOC107772985 LOC107785356 LOC107819998 LOC4338459 LOC4349582 LOC4351296 LOC100274843 LOC8082324 LOC100836923
Function* uncharacterized LOC107933782 transcription factor SCREAM2 transcription factor SCREAM-like protein transcription regulator transcription factor bHLH61 uncharacterized LOC103830041 uncharacterized LOC103863111 uncharacterized LOC106356736 transcription factor bHLH61 uncharacterized LOC102616900 uncharacterized LOC100814138 uncharacterized LOC100305696 uncharacterized LOC100245026 uncharacterized LOC100241403 uncharacterized LOC7458829 transcription factor SCREAM2 transcription factor SCREAM2 uncharacterized LOC11434084 uncharacterized LOC11442077 transcription factor bHLH61 transcription factor SCREAM2-like transcription factor bHLH61-like transcription factor SCREAM2-like transcription factor bHLH61-like transcription factor bHLH93 transcription factor SCREAM2 transcription factor bHLH61 transcription factor SCREAM2 uncharacterized LOC100274843 uncharacterized LOC8082324 uncharacterized LOC100836923
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 3
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00942 Anthocyanin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath02010 ABC transporters 2
ath04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 3
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00350 Tyrosine metabolism 3
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00270 Cysteine and methionine metabolism 2
bna00360 Phenylalanine metabolism 2
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00562 Inositol phosphate metabolism 3
ppo00564 Glycerophospholipid metabolism 2
ppo00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00564 Glycerophospholipid metabolism 2
zma00565 Ether lipid metabolism 2
zma00590 Arachidonic acid metabolism 2
zma00591 Linoleic acid metabolism 2
zma00592 alpha-Linolenic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107933782 107906144 818637 824788 103866502 103830041 103863111 106356736 106450698 102616900 100814138 100305696 100245026 100241403 7458829 7460428 7487355 11434084 11442077 101268000 102583721 102600920 107772985 107785356 107819998 4338459 4349582 4351296 100274843 8082324 100836923
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