ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107906144	transcription factor SCREAM2
ath-u.5	AT2G40435	transcription factor SCREAM-like protein
ath-u.5	AT3G56220	transcription regulator
gma-u.5	100814138	uncharacterized LOC100814138
gma-u.5	100809200	uncharacterized LOC100809200
vvi-u.5	100245026	uncharacterized LOC100245026
vvi-u.5	100241403	uncharacterized LOC100241403
ppo-u.5	7458829	uncharacterized LOC7458829
ppo-u.5	7460428	transcription factor SCREAM2
mtr-u.5	11434084	uncharacterized LOC11434084
mtr-u.5	11442077	uncharacterized LOC11442077
sly-u.5	101268000	transcription factor bHLH61
osa-u.5	4332778	transcription factor SCREAM2
osa-u.5	4338459	transcription factor SCREAM2
osa-u.5	4349582	transcription factor bHLH61
zma-u.5	100274843	uncharacterized LOC100274843

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(4318 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(7681 genes)

IEA

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(1947 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(3140 genes)	IEA

Protein

XP_016688522.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 3, cyto_nucl 2, mito 1

(predict for XP_016688522.1)

Subcellular
localization
TargetP

chlo 6

(predict for XP_016688522.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107906144	ath-u.5 for AT2G40435	ath-u.5 for AT3G56220	gma-u.5 for 100814138	gma-u.5 for 100809200	vvi-u.5 for 100245026	vvi-u.5 for 100241403	ppo-u.5 for 7458829	ppo-u.5 for 7460428	mtr-u.5 for 11434084	mtr-u.5 for 11442077	sly-u.5 for 101268000	osa-u.5 for 4332778	osa-u.5 for 4338459	osa-u.5 for 4349582	zma-u.5 for 100274843

Ortholog

Ortholog ID: 1143

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

sbi

bdi

Symbol

Function^*

uncharacterized LOC107933782

transcription factor SCREAM-like protein

transcription regulator

uncharacterized LOC103830041

uncharacterized LOC103863111

uncharacterized LOC106356736

uncharacterized LOC102616900

uncharacterized LOC100305696

uncharacterized LOC100245026

uncharacterized LOC7458829

transcription factor SCREAM2

uncharacterized LOC11434084

transcription factor bHLH61

transcription factor SCREAM2-like

transcription factor bHLH61-like

transcription factor SCREAM2-like

transcription factor bHLH61-like

transcription factor SCREAM2

uncharacterized LOC100274843

uncharacterized LOC8082324

uncharacterized LOC100836923

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00942	Anthocyanin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	2
ath04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00350	Tyrosine metabolism	3
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bna00270	Cysteine and methionine metabolism	2
bna00360	Phenylalanine metabolism	2
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	3
cit00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00562	Inositol phosphate metabolism	3
ppo00564	Glycerophospholipid metabolism	2
ppo00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr02010	ABC transporters	2
mtr04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00564	Glycerophospholipid metabolism	2
zma00565	Ether lipid metabolism	2
zma00590	Arachidonic acid metabolism	2
zma00591	Linoleic acid metabolism	2
zma00592	alpha-Linolenic acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107933782

818637

824788

103830041

103863111

106356736

102616900

100305696

100245026

7458829

7460428

11434084

101268000

102583721

102600920

107772985

107785356

4338459

4351296

100274843

8082324

100836923

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107906144 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107906144 (ghi-r.1 coexpression data)


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	2	2	2	2	2	1	3	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107906144 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107906144 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**