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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107898558   pre-mRNA-splicing factor syf2 
 ath-u.5   AT2G16860   GCIP-interacting family protein 
 gma-u.5   100811651   pre-mRNA-splicing factor syf2 
 gma-u.5   100787714   pre-mRNA-splicing factor syf2-like 
 vvi-u.5   100252114   uncharacterized LOC100252114 
 ppo-u.5   7470411   uncharacterized LOC7470411 
 mtr-u.5   25485617   pre-mRNA-splicing factor syf2 
 sly-u.5   101245103   pre-mRNA-splicing factor syf2 
 osa-u.5   4342038   uncharacterized LOC4342038 
 zma-u.5   100274600   uncharacterized LOC100274600 
 zma-u.5   100272811   uncharacterized LOC100272811 

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Top 50 coexpressed genes to 107898558 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107898558 (ghi-r.1 coexpression data)

CoexMap"107898558"


ghiLOC107898558 | Entrez gene ID : 107898558    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO CC
GO:0071014 [list] [network] post-mRNA release spliceosomal complex  (23 genes)  IEA  
GO:0000974 [list] [network] Prp19 complex  (27 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (137 genes)  IEA  
GO MF
Protein XP_016679547.1 [sequence] [blastp]
XP_016679548.1 [sequence] [blastp]
XP_016679549.1 [sequence] [blastp]
XP_016679550.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_016679547.1)
nucl 6,  cyto 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_016679548.1)
nucl 6,  cyto 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_016679549.1)
nucl 6,  cyto 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_016679550.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016679547.1)
other 9  (predict for XP_016679548.1)
other 9  (predict for XP_016679549.1)
other 9  (predict for XP_016679550.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107898558
ath-u.5
for
AT2G16860
gma-u.5
for
100811651
gma-u.5
for
100787714
vvi-u.5
for
100252114
ppo-u.5
for
7470411
mtr-u.5
for
25485617
sly-u.5
for
101245103
osa-u.5
for
4342038
zma-u.5
for
100274600
zma-u.5
for
100272811


Ortholog ID: 7151
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot sot nta nta osa zma zma tae tae hvu sbi bdi bdi
Symbol LOC107920904 LOC107949108 AT2G16860 LOC103846014 LOC106394398 LOC106428727 LOC102624154 LOC100787714 LOC100811651 LOC100252114 LOC7470411 LOC25485617 LOC101245103 LOC102589746 LOC102598501 LOC107815181 LOC107786751 LOC4342038 LOC100274600 LOC100272811 LOC123159630 LOC123148507 LOC123409780 LOC8065609 LOC100840457 LOC100831412
Function* pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2 GCIP-interacting family protein pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2 uncharacterized LOC102624154 pre-mRNA-splicing factor syf2-like pre-mRNA-splicing factor syf2 uncharacterized LOC100252114 uncharacterized LOC7470411 pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2-like pre-mRNA-splicing factor syf2-like uncharacterized LOC107815181 uncharacterized LOC107786751 uncharacterized LOC4342038 uncharacterized LOC100274600 uncharacterized LOC100272811 pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2 pre-mRNA-splicing factor syf2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03008 Ribosome biogenesis in eukaryotes 3
zma03083 Polycomb repressive complex 3
zma04712 Circadian rhythm - plant 3
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03008 Ribosome biogenesis in eukaryotes 2
zma03083 Polycomb repressive complex 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107920904 107949108 816187 103846014 106394398 106428727 102624154 100787714 100811651 100252114 7470411 25485617 101245103 102589746 102598501 107815181 107786751 4342038 100274600 100272811 123159630 123148507 123409780 8065609 100840457 100831412
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