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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107898938   pentatricopeptide repeat-containing protein At1g73710 
 ghi-r.1   107948986   pentatricopeptide repeat-containing protein At1g73710 
 ath-u.5   AT1G73710   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103831847   pentatricopeptide repeat-containing protein At1g73710 
 bna-r.1   106354297   pentatricopeptide repeat-containing protein At1g73710 
 bna-r.1   106406360   pentatricopeptide repeat-containing protein At1g73710 
 cit-r.1   102611938   pentatricopeptide repeat-containing protein At1g73710 
 gma-u.5   100819387   pentatricopeptide repeat-containing protein At1g73710 
 vvi-u.5   100244720   pentatricopeptide repeat-containing protein At1g73710 
 ppo-u.5   7497392   pentatricopeptide repeat-containing protein At1g73710 
 mtr-u.5   11428707   pentatricopeptide repeat-containing protein At1g73710 
 sly-u.5   101261836   pentatricopeptide repeat-containing protein At1g73710 
 sot-r.1   102579894   pentatricopeptide repeat-containing protein At1g73710 
 nta-r.1   107812191   pentatricopeptide repeat-containing protein At1g73710-like 
 nta-r.1   107821441   pentatricopeptide repeat-containing protein At1g73710-like 
 osa-u.5   107276837   pentatricopeptide repeat-containing protein At1g73710 
 zma-u.5   100383141   uncharacterized LOC100383141 
 tae-r.2   123160145   pentatricopeptide repeat-containing protein At1g73710 
 tae-r.2   123148286   pentatricopeptide repeat-containing protein At1g73710 
 tae-r.2   123170031   pentatricopeptide repeat-containing protein At1g73710 
 hvu-r.1   123411527   pentatricopeptide repeat-containing protein At1g73710 
 sbi-r.1   8074226   pentatricopeptide repeat-containing protein At1g73710 
 bdi-r.1   104584742   pentatricopeptide repeat-containing protein At1g73710 

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Top 50 coexpressed genes to 107898938 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107898938 (ghi-r.1 coexpression data)

CoexMap"107898938"


ghiLOC107898938 | Entrez gene ID : 107898938    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016679998.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_016679998.1)
Subcellular
localization
TargetP
mito 5,  chlo 3  (predict for XP_016679998.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107898938
ghi-r.1
for
107948986
ath-u.5
for
AT1G73710
bra-r.6
for
103831847
bna-r.1
for
106354297
bna-r.1
for
106406360
cit-r.1
for
102611938
gma-u.5
for
100819387
vvi-u.5
for
100244720
ppo-u.5
for
7497392
mtr-u.5
for
11428707
sly-u.5
for
101261836
sot-r.1
for
102579894
nta-r.1
for
107812191
nta-r.1
for
107821441
osa-u.5
for
107276837
zma-u.5
for
100383141
tae-r.2
for
123160145
tae-r.2
for
123148286
tae-r.2
for
123170031
hvu-r.1
for
123411527
sbi-r.1
for
8074226
bdi-r.1
for
104584742


Ortholog ID: 11521
Species ghi ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107898938 LOC107948986 AT1G73710 LOC103831847 LOC106354297 LOC106406360 LOC102611938 LOC100819387 LOC100244720 LOC7497392 LOC11428707 LOC101261836 LOC102579894 LOC107812191 LOC107821441 LOC107276837 LOC100383141 LOC123160145 LOC123148286 LOC123170031 LOC123411527 LOC8074226 LOC104584742
Function* pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710-like pentatricopeptide repeat-containing protein At1g73710-like pentatricopeptide repeat-containing protein At1g73710 uncharacterized LOC100383141 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710 pentatricopeptide repeat-containing protein At1g73710
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 3
gma04148 Efferocytosis 3
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107898938 107948986 843706 103831847 106354297 106406360 102611938 100819387 100244720 7497392 11428707 101261836 102579894 107812191 107821441 107276837 100383141 123160145 123148286 123170031 123411527 8074226 104584742
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