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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107959278   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 cit-r.1   102623126   pentatricopeptide repeat-containing protein At1g18485-like 
 gma-u.5   100780689   putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial 
 mtr-u.5   25488894   pentatricopeptide repeat-containing protein At3g16610 
 sly-u.5   101253876   pentatricopeptide repeat-containing protein At1g18485-like 
 sot-r.1   102595447   pentatricopeptide repeat-containing protein At4g14170-like 
 nta-r.1   107824841   putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial 
 nta-r.1   107771664   pentatricopeptide repeat-containing protein At5g27110-like 
 osa-u.5   4351907   pentatricopeptide repeat-containing protein At5g27110 
 tae-r.2   123055151   pentatricopeptide repeat-containing protein At1g18485 
 tae-r.2   123191001   pentatricopeptide repeat-containing protein At1g18485 
 hvu-r.1   123431216   pentatricopeptide repeat-containing protein At1g18485-like 
 sbi-r.1   8061060   pentatricopeptide repeat-containing protein At1g18485 

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Top 50 coexpressed genes to 107959278 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107959278 (ghi-r.1 coexpression data)

CoexMap"107902790"


ghiLOC107902790 | Entrez gene ID : 107902790    
Species ghi cit gma mtr sly sot nta osa tae hvu sbi vvi bdi bna ppo zma cre ath bra
Paralog 1 1 1 1 1 1 2 1 2 1 1 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (557 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (14879 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016684400.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_016684400.1)
Subcellular
localization
TargetP
mito 2  (predict for XP_016684400.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107959278
cit-r.1
for
102623126
gma-u.5
for
100780689
mtr-u.5
for
25488894
sly-u.5
for
101253876
sot-r.1
for
102595447
nta-r.1
for
107824841
nta-r.1
for
107771664
osa-u.5
for
4351907
tae-r.2
for
123055151
tae-r.2
for
123191001
hvu-r.1
for
123431216
sbi-r.1
for
8061060


Ortholog ID: 12825
Species ghi cit gma mtr sly sot nta nta osa tae tae hvu sbi
Symbol LOC107959278 LOC102623126 LOC100780689 LOC25488894 LOC101253876 LOC102595447 LOC107824841 LOC107771664 LOC4351907 LOC123055151 LOC123191001 LOC123431216 LOC8061060
Function* pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein At1g18485-like putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial pentatricopeptide repeat-containing protein At3g16610 pentatricopeptide repeat-containing protein At1g18485-like pentatricopeptide repeat-containing protein At4g14170-like putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial pentatricopeptide repeat-containing protein At5g27110-like pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At1g18485 pentatricopeptide repeat-containing protein At1g18485 pentatricopeptide repeat-containing protein At1g18485-like pentatricopeptide repeat-containing protein At1g18485
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107959278 102623126 100780689 25488894 101253876 102595447 107824841 107771664 4351907 123055151 123191001 123431216 8061060
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